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    Results: 1 to 20 of 424

    1.

    Accelerated search for biomolecular network models to interpret high-throughput experimental data.

    Datta S, Sokhansanj BA.

    BMC Bioinformatics. 2007 Jul 18;8:258.PMID: 17640351 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Linear fuzzy gene network models obtained from microarray data by exhaustive search.

    Sokhansanj BA, Fitch JP, Quong JN, Quong AA.

    BMC Bioinformatics. 2004 Aug 10;5:108.PMID: 15304201 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    A copula method for modeling directional dependence of genes.

    Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

    BMC Bioinformatics. 2008 May 1;9:225.PMID: 18447957 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Identification of functional modules using network topology and high-throughput data.

    Ulitsky I, Shamir R.

    BMC Syst Biol. 2007 Jan 26;1:8.PMID: 17408515 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks.

    Kim CS.

    BMC Bioinformatics. 2007 Jul 13;8:251.PMID: 17626641 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Inferring gene regulatory networks using differential evolution with local search heuristics.

    Noman N, Iba H.

    IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec;4(4):634-47.PMID: 17975274 [PubMed - indexed for MEDLINE]Related articles

    7.

    DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data.

    Glez-Peña D, Alvarez R, Díaz F, Fdez-Riverola F.

    BMC Bioinformatics. 2009 Jan 29;10:37.PMID: 19178723 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress.

    Taylor RC, Acquaah-Mensah G, Singhal M, Malhotra D, Biswal S.

    PLoS Comput Biol. 2008 Aug 29;4(8):e1000166.PMID: 18769717 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    A fuzzy logic approach to analyzing gene expression data.

    Woolf PJ, Wang Y.

    Physiol Genomics. 2000 Jun 29;3(1):9-15.PMID: 11015595 [PubMed - indexed for MEDLINE]Related articles

    10.

    Inferring gene regulatory networks by integrating static and dynamic data.

    Ferrazzi F, Magni P, Sacchi L, Nuzzo A, Petrovic U, Bellazzi R.

    Int J Med Inform. 2007 Dec;76 Suppl 3:S462-75. Epub 2007 Sep 6.PMID: 17825607 [PubMed - indexed for MEDLINE]Related articles

    11.

    Combining Pareto-optimal clusters using supervised learning for identifying co-expressed genes.

    Maulik U, Mukhopadhyay A, Bandyopadhyay S.

    BMC Bioinformatics. 2009 Jan 20;10:27.PMID: 19154590 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Mining and state-space modeling and verification of sub-networks from large-scale biomolecular networks.

    Hu X, Wu FX.

    BMC Bioinformatics. 2007 Aug 31;8:324.PMID: 17764552 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    M-BISON: microarray-based integration of data sources using networks.

    Daigle BJ Jr, Altman RB.

    BMC Bioinformatics. 2008 Apr 25;9:214.PMID: 18439292 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Mining, modeling, and evaluation of subnetworks from large biomolecular networks and its comparison study.

    Hu X, Ng M, Wu FX, Sokhansanj BA.

    IEEE Trans Inf Technol Biomed. 2009 Mar;13(2):184-94.PMID: 19272861 [PubMed - indexed for MEDLINE]Related articles

    15.

    Inferring genetic regulatory logic from expression data.

    Bulashevska S, Eils R.

    Bioinformatics. 2005 Jun 1;21(11):2706-13. Epub 2005 Mar 22.PMID: 15784747 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Reverse engineering module networks by PSO-RNN hybrid modeling.

    Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

    BMC Genomics. 2009 Jul 7;10 Suppl 1:S15.PMID: 19594874 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory.

    Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J.

    BMC Bioinformatics. 2007 Aug 14;8:299.PMID: 17697349 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    A duplication growth model of gene expression networks.

    Bhan A, Galas DJ, Dewey TG.

    Bioinformatics. 2002 Nov;18(11):1486-93.PMID: 12424120 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Network evaluation from the consistency of the graph structure with the measured data.

    Saito S, Aburatani S, Horimoto K.

    BMC Syst Biol. 2008 Oct 1;2:84.PMID: 18828895 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Discovery of Time-Delayed Gene Regulatory Networks based on temporal gene expression profiling.

    Li X, Rao S, Jiang W, Li C, Xiao Y, Guo Z, Zhang Q, Wang L, Du L, Li J, Li L, Zhang T, Wang QK.

    BMC Bioinformatics. 2006 Jan 18;7:26.PMID: 16420705 [PubMed - indexed for MEDLINE]Related articlesFree article

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