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In silico, biologically-inspired modelling of genomic variation generation in surface proteins of Trypanosoma cruzi.

Azuaje FJ, Ramirez JL, Da Silveira JF.

Kinetoplastid Biol Dis. 2007 Jul 10;6:6.PMID: 17623100 [PubMed]Related articlesFree article

Database of Trypanosoma cruzi repeated genes: 20,000 additional gene variants.

Arner E, Kindlund E, Nilsson D, Farzana F, Ferella M, Tammi MT, Andersson B.

BMC Genomics. 2007 Oct 26;8:391.PMID: 17963481 [PubMed - indexed for MEDLINE]Related articlesFree article

An exploration of the genetic robustness landscape of surface protein families in the human protozoan parasite Trypanosoma cruzi.

Azuaje F, Ramirez JL, Da Silveira JF.

IEEE Trans Nanobioscience. 2007 Sep;6(3):223-8.PMID: 17926780 [PubMed - indexed for MEDLINE]Related articles

Sequence diversity and evolution of multigene families in Trypanosoma cruzi.

Cerqueira GC, Bartholomeu DC, DaRocha WD, Hou L, Freitas-Silva DM, Machado CR, El-Sayed NM, Teixeira SM.

Mol Biochem Parasitol. 2008 Jan;157(1):65-72. Epub 2007 Oct 6.PMID: 18023889 [PubMed - indexed for MEDLINE]Related articles

Telomere and subtelomere of Trypanosoma cruzi chromosomes are enriched in (pseudo)genes of retrotransposon hot spot and trans-sialidase-like gene families: the origins of T. cruzi telomeres.

Kim D, Chiurillo MA, El-Sayed N, Jones K, Santos MR, Porcile PE, Andersson B, Myler P, da Silveira JF, Ramírez JL.

Gene. 2005 Feb 14;346:153-61. Epub 2005 Jan 28.PMID: 15716016 [PubMed - indexed for MEDLINE]Related articles

Exploring the FL-160-CRP gene family through sequence variability of the complement regulatory protein (CRP) expressed by the trypomastigote stage of Trypanosoma cruzi.

Mathieu-Daudé F, Lafay B, Touzet O, Lelièvre J, Parrado F, Bosseno MF, Rojas AM, Fatha S, Ouaissi A, Brenière SF.

Infect Genet Evol. 2008 May;8(3):258-66. Epub 2008 Jan 16.PMID: 18296127 [PubMed - indexed for MEDLINE]Related articles

A random sequencing approach for the analysis of the Trypanosoma cruzi genome: general structure, large gene and repetitive DNA families, and gene discovery.

Agüero F, Verdún RE, Frasch AC, Sánchez DO.

Genome Res. 2000 Dec;10(12):1996-2005.PMID: 11116094 [PubMed - indexed for MEDLINE]Related articlesFree article

Complete mitochondrial DNA sequence of oyster Crassostrea hongkongensis-a case of "Tandem duplication-random loss" for genome rearrangement in Crassostrea?

Yu Z, Wei Z, Kong X, Shi W.

BMC Genomics. 2008 Oct 11;9:477.PMID: 18847502 [PubMed - indexed for MEDLINE]Related articlesFree article

DNA metabolism and genetic diversity in Trypanosomes.

Machado CR, Augusto-Pinto L, McCulloch R, Teixeira SM.

Mutat Res. 2006 Jan;612(1):40-57. Epub 2005 Jul 22. Review.PMID: 16040270 [PubMed - indexed for MEDLINE]Related articles

Differential accumulation of mutations localized in particular domains of the mucin genes expressed in the vertebrate host stage of Trypanosoma cruzi.

Campo V, Di Noia JM, Buscaglia CA, Agüero F, Sánchez DO, Frasch AC.

Mol Biochem Parasitol. 2004 Jan;133(1):81-91.PMID: 14668015 [PubMed - indexed for MEDLINE]Related articles

Safety and nutritional assessment of GM plants and derived food and feed: the role of animal feeding trials.

EFSA GMO Panel Working Group on Animal Feeding Trials.

Food Chem Toxicol. 2008 Mar;46 Suppl 1:S2-70. Epub 2008 Feb 13. Review.PMID: 18328408 [PubMed - indexed for MEDLINE]Related articles

Machine learning techniques for the automated classification of adhesin-like proteins in the human protozoan parasite Trypanosoma cruzi.

González AM, Azuaje FJ, Ramírez JL, da Silveira JF, Dorronsoro JR.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Oct-Dec;6(4):695-702.PMID: 19875867 [PubMed - in process]Related articles

Sequence diversity of the Trypanosoma cruzi complement regulatory protein family.

Beucher M, Norris KA.

Infect Immun. 2008 Feb;76(2):750-8. Epub 2007 Dec 10.PMID: 18070905 [PubMed - indexed for MEDLINE]Related articlesFree article

Genomic rearrangements correlated with antigenic variation in Trypanosoma brucei.

Williams RO, Young JR, Majiwa PA.

Nature. 1979 Dec 20-27;282(5741):847-9.PMID: 514362 [PubMed - indexed for MEDLINE]Related articles

Antigenic diversity by the recombination of pseudogenes.

Thon G, Baltz T, Eisen H.

Genes Dev. 1989 Aug;3(8):1247-54.PMID: 2792762 [PubMed - indexed for MEDLINE]Related articlesFree article

Isolation and analysis of the genetic diversity of repertoires of VSG expression site containing telomeres from Trypanosoma brucei gambiense, T. b. brucei and T. equiperdum.

Young R, Taylor JE, Kurioka A, Becker M, Louis EJ, Rudenko G.

BMC Genomics. 2008 Aug 12;9:385.PMID: 18700033 [PubMed - indexed for MEDLINE]Related articlesFree article

VSGdb: a database for trypanosome variant surface glycoproteins, a large and diverse family of coiled coil proteins.

Marcello L, Menon S, Ward P, Wilkes JM, Jones NG, Carrington M, Barry JD.

BMC Bioinformatics. 2007 May 2;8:143.PMID: 17474977 [PubMed - indexed for MEDLINE]Related articlesFree article

A mucin like gene different from the previously reported members of the mucin like gene families is transcribed in Trypanosoma cruzi but not in Trypanosoma rangeli.

Abate T, Rincón M, Díaz-Bello Z, Spencer L, Rodríguez-Acosta A.

Mem Inst Oswaldo Cruz. 2005 Jul;100(4):391-5. Epub 2005 Aug 17.PMID: 16113887 [PubMed - indexed for MEDLINE]Related articlesFree article

The biology of kinetoplastid parasites: insights and challenges from genomics and post-genomics.

Gull K.

Int J Parasitol. 2001 May 1;31(5-6):443-52. Review.PMID: 11334928 [PubMed - indexed for MEDLINE]Related articles

Origins of amino acid transporter loci in trypanosomatid parasites.

Jackson AP.

BMC Evol Biol. 2007 Feb 23;7:26.PMID: 17319943 [PubMed - indexed for MEDLINE]Related articlesFree article