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    Results: 1 to 20 of 1015

    1.

    Improving gene set analysis of microarray data by SAM-GS.

    Dinu I, Potter JD, Mueller T, Liu Q, Adewale AJ, Jhangri GS, Einecke G, Famulski KS, Halloran P, Yasui Y.

    BMC Bioinformatics. 2007 Jul 5;8:242.PMID: 17612399 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Comparative evaluation of gene-set analysis methods.

    Liu Q, Dinu I, Adewale AJ, Potter JD, Yasui Y.

    BMC Bioinformatics. 2007 Nov 7;8:431.PMID: 17988400 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Gene set enrichment analysis for non-monotone association and multiple experimental categories.

    Lin R, Dai S, Irwin RD, Heinloth AN, Boorman GA, Li L.

    BMC Bioinformatics. 2008 Nov 14;9:481.PMID: 19014579 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Gene-set analysis and reduction.

    Dinu I, Potter JD, Mueller T, Liu Q, Adewale AJ, Jhangri GS, Einecke G, Famulski KS, Halloran P, Yasui Y.

    Brief Bioinform. 2009 Jan;10(1):24-34. Epub 2008 Oct 4. Review.PMID: 18836208 [PubMed - indexed for MEDLINE]Related articles

    5.

    Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.

    Chou JW, Zhou T, Kaufmann WK, Paules RS, Bushel PR.

    BMC Bioinformatics. 2007 Nov 2;8:427.PMID: 17980031 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Testing gene set enrichment for subset of genes: Sub-GSE.

    Yan X, Sun F.

    BMC Bioinformatics. 2008 Sep 2;9:362.PMID: 18764941 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    GAGE: generally applicable gene set enrichment for pathway analysis.

    Luo W, Friedman MS, Shedden K, Hankenson KD, Woolf PJ.

    BMC Bioinformatics. 2009 May 27;10:161.PMID: 19473525 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    PAGE: parametric analysis of gene set enrichment.

    Kim SY, Volsky DJ.

    BMC Bioinformatics. 2005 Jun 8;6:144.PMID: 15941488 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    A biological evaluation of six gene set analysis methods for identification of differentially expressed pathways in microarray data.

    Dinu I, Liu Q, Potter JD, Adewale AJ, Jhangri GS, Mueller T, Einecke G, Famulsky K, Halloran P, Yasui Y.

    Cancer Inform. 2008;6:357-68. Epub 2008 Jun 20.PMID: 19259416 [PubMed - in process]Related articlesFree article

    10.

    Methods for evaluating gene expression from Affymetrix microarray datasets.

    Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.

    BMC Bioinformatics. 2008 Jun 17;9:284.PMID: 18559105 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    A meta-data based method for DNA microarray imputation.

    Jörnsten R, Ouyang M, Wang HY.

    BMC Bioinformatics. 2007 Mar 29;8:109.PMID: 17394658 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    A unified framework for finding differentially expressed genes from microarray experiments.

    Shaik JS, Yeasin M.

    BMC Bioinformatics. 2007 Sep 18;8:347.PMID: 17877806 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Creating gene set activity profiles with time-series expression data.

    Knijnenburg TA, Wessels LF, Reinders MJ.

    Int J Bioinform Res Appl. 2008;4(3):306-23.PMID: 18640906 [PubMed - indexed for MEDLINE]Related articles

    14.

    SEGS: search for enriched gene sets in microarray data.

    Trajkovski I, Lavrac N, Tolar J.

    J Biomed Inform. 2008 Aug;41(4):588-601. Epub 2007 Dec 15.PMID: 18234563 [PubMed - indexed for MEDLINE]Related articles

    15.

    Improving the power for detecting overlapping genes from multiple DNA microarray-derived gene lists.

    Deng X, Xu J, Wang C.

    BMC Bioinformatics. 2008 May 28;9 Suppl 6:S14.PMID: 18541049 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Kernel-imbedded Gaussian processes for disease classification using microarray gene expression data.

    Zhao X, Cheung LW.

    BMC Bioinformatics. 2007 Feb 28;8:67.PMID: 17328811 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Building pathway clusters from Random Forests classification using class votes.

    Pang H, Zhao H.

    BMC Bioinformatics. 2008 Feb 6;9:87.PMID: 18254968 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Extensions to gene set enrichment.

    Jiang Z, Gentleman R.

    Bioinformatics. 2007 Feb 1;23(3):306-13. Epub 2006 Nov 24.PMID: 17127676 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Bayesian modelling of shared gene function.

    Sykacek P, Clarkson R, Print C, Furlong R, Micklem G.

    Bioinformatics. 2007 Aug 1;23(15):1936-44. Epub 2007 May 31.PMID: 17540682 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Improving the prediction accuracy in classification using the combined data sets by ranks of gene expressions.

    Kim KY, Ki DH, Jeung HC, Chung HC, Rha SY.

    BMC Bioinformatics. 2008 Jun 16;9:283.PMID: 18554423 [PubMed - indexed for MEDLINE]Related articlesFree article

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