PubMed

Laboratory methods to improve SELDI peak detection and quantitation.

Rollin D, Whistler T, Vernon SD.

Proteome Sci. 2007 Jul 2;5:9.PMID: 17605798 [PubMed]Related articlesFree article

Evaluation of serum protein profiling by surface-enhanced laser desorption/ionization time-of-flight mass spectrometry for the detection of prostate cancer: I. Assessment of platform reproducibility.

Semmes OJ, Feng Z, Adam BL, Banez LL, Bigbee WL, Campos D, Cazares LH, Chan DW, Grizzle WE, Izbicka E, Kagan J, Malik G, McLerran D, Moul JW, Partin A, Prasanna P, Rosenzweig J, Sokoll LJ, Srivastava S, Srivastava S, Thompson I, Welsh MJ, White N, Winget M, Yasui Y, Zhang Z, Zhu L.

Clin Chem. 2005 Jan;51(1):102-12.PMID: 15613711 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data.

Cruz-Marcelo A, Guerra R, Vannucci M, Li Y, Lau CC, Man TK.

Bioinformatics. 2008 Oct 1;24(19):2129-36. Epub 2008 Aug 11.PMID: 18694894 [PubMed - indexed for MEDLINE]Related articlesFree article

A method for improving SELDI-TOF mass spectrometry data quality.

Whistler T, Rollin D, Vernon SD.

Proteome Sci. 2007 Sep 5;5:14.PMID: 17803814 [PubMed - in process]Related articlesFree article

Proteomic analysis of dunning prostate cancer cell lines with variable metastatic potential using SELDI-TOF.

Gretzer MB, Chan DW, van Rootselaar CL, Rosenzweig JM, Dalrymple S, Mangold LA, Partin AW, Veltri RW.

Prostate. 2004 Sep 1;60(4):325-31.PMID: 15264244 [PubMed - indexed for MEDLINE]Related articles

Enhancement of sensitivity and resolution of surface-enhanced laser desorption/ionization time-of-flight mass spectrometric records for serum peptides using time-series analysis techniques.

Malyarenko DI, Cooke WE, Adam BL, Malik G, Chen H, Tracy ER, Trosset MW, Sasinowski M, Semmes OJ, Manos DM.

Clin Chem. 2005 Jan;51(1):65-74. Epub 2004 Nov 18.PMID: 15550476 [PubMed - indexed for MEDLINE]Related articlesFree article

Quantitative quality-assessment techniques to compare fractionation and depletion methods in SELDI-TOF mass spectrometry experiments.

Harezlak J, Wang M, Christiani D, Lin X.

Bioinformatics. 2007 Sep 15;23(18):2441-8. Epub 2007 Jul 11.PMID: 17626063 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparing the old and new generation SELDI-TOF MS: implications for serum protein profiling.

Gast MC, Engwegen JY, Schellens JH, Beijnen JH.

BMC Med Genomics. 2008 Jan 31;1:4.PMID: 18237384 [PubMed]Related articlesFree article

Comparison of software tools to improve the detection of carcinogen induced changes in the rat liver proteome by analyzing SELDI-TOF-MS spectra.

Beyer S, Walter Y, Hellmann J, Kramer PJ, Kopp-Schneider A, Kroeger M, Ittrich C.

J Proteome Res. 2006 Feb;5(2):254-61.PMID: 16457590 [PubMed - indexed for MEDLINE]Related articles

Protein detection in dried blood by surface-enhanced laser desorption/ionization-time of flight mass spectrometry (SELDI-TOF MS).

Dammann CE, Meyer M, Dammann O, von Neuhoff N.

Biol Neonate. 2006;89(2):126-32. Epub 2005 Oct 5.PMID: 16210847 [PubMed - indexed for MEDLINE]Related articles

Differences in protein profiles of the isolates of Entamoeba histolytica and E. dispar by surface-enhanced laser desorption ionization time-of-flight mass spectrometry (SELDI-TOF MS) ProteinChip assays.

Makioka A, Kumagai M, Kobayashi S, Takeuchi T.

Parasitol Res. 2007 Dec;102(1):103-10. Epub 2007 Sep 11.PMID: 17846790 [PubMed - indexed for MEDLINE]Related articles

Serum proteomics and biomarkers in hepatocellular carcinoma and chronic liver disease.

Zinkin NT, Grall F, Bhaskar K, Otu HH, Spentzos D, Kalmowitz B, Wells M, Guerrero M, Asara JM, Libermann TA, Afdhal NH.

Clin Cancer Res. 2008 Jan 15;14(2):470-7.PMID: 18223221 [PubMed - indexed for MEDLINE]Related articlesFree article

Influence of sample storage duration on serum protein profiles assessed by surface-enhanced laser desorption/ionisation time-of-flight mass spectrometry (SELDI-TOF MS).

Gast MC, van Gils CH, Wessels LF, Harris N, Bonfrer JM, Rutgers EJ, Schellens JH, Beijnen JH.

Clin Chem Lab Med. 2009;47(6):694-705.PMID: 19416081 [PubMed - indexed for MEDLINE]Related articles

Preanalytic influence of sample handling on SELDI-TOF serum protein profiles.

Timms JF, Arslan-Low E, Gentry-Maharaj A, Luo Z, T'Jampens D, Podust VN, Ford J, Fung ET, Gammerman A, Jacobs I, Menon U.

Clin Chem. 2007 Apr;53(4):645-56. Epub 2007 Feb 15.PMID: 17303688 [PubMed - indexed for MEDLINE]Related articlesFree article

Pooling serum samples may lead to loss of potential biomarkers in SELDI-ToF MS proteomic profiling.

Sadiq ST, Agranoff D.

Proteome Sci. 2008 Jun 1;6:16.PMID: 18513446 [PubMed]Related articlesFree article

Integrated multi-level quality control for proteomic profiling studies using mass spectrometry.

Cairns DA, Perkins DN, Stanley AJ, Thompson D, Barrett JH, Selby PJ, Banks RE.

BMC Bioinformatics. 2008 Dec 4;9:519.PMID: 19055809 [PubMed - indexed for MEDLINE]Related articlesFree article

The potential biomarkers for thromboembolism detected by SELDI-TOF-MS.

Hong M, Zhang X, Hu Y, Wang H, He W, Mei H, Yu J, Guo T, Song S.

Thromb Res. 2009;123(3):556-64. Epub 2008 Jul 11.PMID: 18620739 [PubMed - indexed for MEDLINE]Related articles

[Surface enhanced laser desorption/ionization time-of-flight mass spectrometry profiling of serum in detection of laryngeal squamous cell carcinoma and the progression to lymph node metastasis]

Cheng L, Zhou L, Tao L, Zhang M, Cui JF, Liu YK.

Zhonghua Yi Xue Za Zhi. 2007 Sep 25;87(36):2526-30. Chinese. PMID: 18067823 [PubMed - indexed for MEDLINE]Related articles

Proteomic data analysis workflow for discovery of candidate biomarker peaks predictive of clinical outcome for patients with acute myeloid leukemia.

Forshed J, Pernemalm M, Tan CS, Lindberg M, Kanter L, Pawitan Y, Lewensohn R, Stenke L, Lehtiö J.

J Proteome Res. 2008 Jun;7(6):2332-41. Epub 2008 May 2.PMID: 18452325 [PubMed - indexed for MEDLINE]Related articles

Improving feature detection and analysis of surface-enhanced laser desorption/ionization-time of flight mass spectra.

Carlson SM, Najmi A, Whitin JC, Cohen HJ.

Proteomics. 2005 Jul;5(11):2778-88.PMID: 15986333 [PubMed - indexed for MEDLINE]Related articles