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    Results: 1 to 20 of 215

    1.

    Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.

    Sela N, Mersch B, Gal-Mark N, Lev-Maor G, Hotz-Wagenblatt A, Ast G.

    Genome Biol. 2007;8(6):R127.

    PMID:
    17594509
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    SERpredict: detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements.

    Mersch B, Sela N, Ast G, Suhai S, Hotz-Wagenblatt A.

    BMC Genet. 2007 Nov 6;8:78.

    PMID:
    17986331
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates.

    Sela N, Kim E, Ast G.

    Genome Biol. 2010;11(6):R59. Epub 2010 Jun 2.

    PMID:
    20525173
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Characteristics of transposable element exonization within human and mouse.

    Sela N, Mersch B, Hotz-Wagenblatt A, Ast G.

    PLoS One. 2010 Jun 1;5(6):e10907.

    PMID:
    20532223
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene.

    Amit M, Sela N, Keren H, Melamed Z, Muler I, Shomron N, Izraeli S, Ast G.

    BMC Mol Biol. 2007 Nov 29;8:109.

    PMID:
    18047649
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates.

    Levy A, Sela N, Ast G.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D47-52. Epub 2007 Nov 5.

    PMID:
    17986453
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Bioinformatic analysis of TE-spliced new exons within human, mouse and zebrafish genomes.

    Kim DS, Huh JW, Kim YH, Park SJ, Kim HS, Chang KT.

    Genomics. 2010 Nov;96(5):266-71. Epub 2010 Aug 20.

    PMID:
    20728532
    [PubMed - indexed for MEDLINE]
    8.

    Intronic Alus influence alternative splicing.

    Lev-Maor G, Ram O, Kim E, Sela N, Goren A, Levanon EY, Ast G.

    PLoS Genet. 2008 Sep 26;4(9):e1000204.

    PMID:
    18818740
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Transposable elements in disease-associated cryptic exons.

    Vorechovsky I.

    Hum Genet. 2010 Feb;127(2):135-54. Epub 2009 Oct 10.

    PMID:
    19823873
    [PubMed - indexed for MEDLINE]
    10.

    Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes.

    Lin L, Jiang P, Shen S, Sato S, Davidson BL, Xing Y.

    Hum Mol Genet. 2009 Jun 15;18(12):2204-14. Epub 2009 Mar 26.

    PMID:
    19324900
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Evolutionary history of mammalian transposons determined by genome-wide defragmentation.

    Giordano J, Ge Y, Gelfand Y, Abrusán G, Benson G, Warburton PE.

    PLoS Comput Biol. 2007 Jul;3(7):e137.

    PMID:
    17630829
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements.

    Levy A, Schwartz S, Ast G.

    Nucleic Acids Res. 2010 Mar;38(5):1515-30. Epub 2009 Dec 14.

    PMID:
    20008508
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Alternative splicing of Alu exons--two arms are better than one.

    Gal-Mark N, Schwartz S, Ast G.

    Nucleic Acids Res. 2008 Apr;36(6):2012-23. Epub 2008 Feb 14.

    PMID:
    18276646
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Distributions of transposable elements reveal hazardous zones in mammalian introns.

    Zhang Y, Romanish MT, Mager DL.

    PLoS Comput Biol. 2011 May;7(5):e1002046. Epub 2011 May 5.

    PMID:
    21573203
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Transposable element fragments in protein-coding regions and their contributions to human functional proteins.

    Wu M, Li L, Sun Z.

    Gene. 2007 Oct 15;401(1-2):165-71. Epub 2007 Jul 26.

    PMID:
    17716834
    [PubMed - indexed for MEDLINE]
    16.

    Beyond DNA: RNA editing and steps toward Alu exonization in primates.

    Möller-Krull M, Zemann A, Roos C, Brosius J, Schmitz J.

    J Mol Biol. 2008 Oct 10;382(3):601-9. Epub 2008 Jul 16.

    PMID:
    18680752
    [PubMed - indexed for MEDLINE]
    17.

    Multifactorial interplay controls the splicing profile of Alu-derived exons.

    Ram O, Schwartz S, Ast G.

    Mol Cell Biol. 2008 May;28(10):3513-25. Epub 2008 Mar 10.

    PMID:
    18332115
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome.

    Lipatov M, Lenkov K, Petrov DA, Bergman CM.

    BMC Biol. 2005 Nov 12;3:24.

    PMID:
    16283942
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Evaluating the protein coding potential of exonized transposable element sequences.

    Piriyapongsa J, Rutledge MT, Patel S, Borodovsky M, Jordan IK.

    Biol Direct. 2007 Nov 26;2:31.

    PMID:
    18036258
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Lineage specific evolutionary events on SFTPB gene: Alu recombination-mediated deletion (ARMD), exonization, and alternative splicing events.

    Lee JR, Huh JW, Kim DS, Ha HS, Ahn K, Kim YJ, Chang KT, Kim HS.

    Gene. 2009 Apr 15;435(1-2):29-35. Epub 2009 Jan 23.

    PMID:
    19393186
    [PubMed - indexed for MEDLINE]

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