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    Results: 1 to 20 of 114

    1.

    Celsius: a community resource for Affymetrix microarray data.

    Day A, Carlson MR, Dong J, O'Connor BD, Nelson SF.

    Genome Biol. 2007;8(6):R112.

    PMID:
    17570842
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    EzArray: a web-based highly automated Affymetrix expression array data management and analysis system.

    Zhu Y, Zhu Y, Xu W.

    BMC Bioinformatics. 2008 Jan 24;9:46.

    PMID:
    18218103
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Microarray meta-analysis database (M(2)DB): a uniformly pre-processed, quality controlled, and manually curated human clinical microarray database.

    Cheng WC, Tsai ML, Chang CW, Huang CL, Chen CR, Shu WY, Lee YS, Wang TH, Hong JH, Li CY, Hsu IC.

    BMC Bioinformatics. 2010 Aug 10;11:421.

    PMID:
    20698961
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    The genopolis microarray database.

    Splendiani A, Brandizi M, Even G, Beretta O, Pavelka N, Pelizzola M, Mayhaus M, Foti M, Mauri G, Ricciardi-Castagnoli P.

    BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S21.

    PMID:
    17430566
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    The Stanford Microarray Database accommodates additional microarray platforms and data formats.

    Ball CA, Awad IA, Demeter J, Gollub J, Hebert JM, Hernandez-Boussard T, Jin H, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G.

    Nucleic Acids Res. 2005 Jan 1;33(Database issue):D580-2.

    PMID:
    15608265
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

    Kuhn A, Luthi-Carter R, Delorenzi M.

    BMC Bioinformatics. 2008 Jan 17;9:26.

    PMID:
    18201381
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    A suite of Perl modules for handling microarray data.

    Morris JA, Gayther SA, Jacobs IJ, Jones C.

    Bioinformatics. 2008 Apr 15;24(8):1102-3. Epub 2008 Mar 18.

    PMID:
    18353790
    [PubMed - indexed for MEDLINE]
    Free Article
    8.

    SoyXpress: a database for exploring the soybean transcriptome.

    Cheng KC, Strömvik MV.

    BMC Genomics. 2008 Aug 1;9:368.

    PMID:
    18671881
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    CanGEM: mining gene copy number changes in cancer.

    Scheinin I, Myllykangas S, Borze I, Böhling T, Knuutila S, Saharinen J.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D830-5. Epub 2007 Oct 11.

    PMID:
    17932056
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    The Longhorn Array Database (LAD): an open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD).

    Killion PJ, Sherlock G, Iyer VR.

    BMC Bioinformatics. 2003 Aug 20;4:32. Epub 2003 Aug 20.

    PMID:
    12930545
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    lumi: a pipeline for processing Illumina microarray.

    Du P, Kibbe WA, Lin SM.

    Bioinformatics. 2008 Jul 1;24(13):1547-8. Epub 2008 May 8.

    PMID:
    18467348
    [PubMed - indexed for MEDLINE]
    Free Article
    12.

    Novel definition files for human GeneChips based on GeneAnnot.

    Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA, Bicciato S.

    BMC Bioinformatics. 2007 Nov 15;8:446.

    PMID:
    18005434
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Analyzing and visualizing expression data with Spotfire.

    Kaushal D, Naeve CW.

    Curr Protoc Bioinformatics. 2004 Oct;Chapter 7:Unit 7.9.

    PMID:
    18428735
    [PubMed - indexed for MEDLINE]
    14.

    GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus.

    Zhu Y, Davis S, Stephens R, Meltzer PS, Chen Y.

    Bioinformatics. 2008 Dec 1;24(23):2798-800. Epub 2008 Oct 7.

    PMID:
    18842599
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Microarray labeling extension values: laboratory signatures for Affymetrix GeneChips.

    Lee YS, Chen CH, Tsai CN, Tsai CL, Chao A, Wang TH.

    Nucleic Acids Res. 2009 May;37(8):e61. Epub 2009 Mar 18.

    PMID:
    19295132
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Microarray data visualization and analysis with the Longhorn Array Database (LAD).

    Killion PJ, Iyer VR.

    Curr Protoc Bioinformatics. 2004 Dec;Chapter 7:Unit 7.10.

    PMID:
    18428730
    [PubMed - indexed for MEDLINE]
    17.

    Implementation of GenePattern within the Stanford Microarray Database.

    Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, Reddy TB, Wymore F, Zachariah ZK, Sherlock G, Ball CA.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D898-901. Epub 2008 Oct 25.

    PMID:
    18953035
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.

    Liu H, Zeeberg BR, Qu G, Koru AG, Ferrucci A, Kahn A, Ryan MC, Nuhanovic A, Munson PJ, Reinhold WC, Kane DW, Weinstein JN.

    Bioinformatics. 2007 Sep 15;23(18):2385-90. Epub 2007 Jul 27.

    PMID:
    17660211
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    A cube framework for incorporating inter-gene information into biological data mining.

    Lin KM, Kang J, Shin H, Lee J.

    Int J Data Min Bioinform. 2009;3(1):3-22.

    PMID:
    19432373
    [PubMed - indexed for MEDLINE]
    20.

    Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata.

    Faith JJ, Driscoll ME, Fusaro VA, Cosgrove EJ, Hayete B, Juhn FS, Schneider SJ, Gardner TS.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D866-70. Epub 2007 Oct 11.

    PMID:
    17932051
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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