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    Results: 1 to 20 of 475

    1.

    Gene function prediction based on genomic context clustering and discriminative learning: an application to bacteriophages.

    Li J, Halgamuge SK, Kells CI, Tang SL.

    BMC Bioinformatics. 2007 May 22;8 Suppl 4:S6.PMID: 17570149 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Clustering of main orthologs for multiple genomes.

    Fu Z, Jiang T.

    Comput Syst Bioinformatics Conf. 2007;6:195-201.PMID: 17951824 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Accurate prediction of orthologous gene groups in microbes.

    Wu H, Mao F, Olman V, Xu Y.

    Proc IEEE Comput Syst Bioinform Conf. 2005:73-9.PMID: 16447964 [PubMed - indexed for MEDLINE]Related articles

    4.

    Genome classification by gene distribution: an overlapping subspace clustering approach.

    Li J, Halgamuge SK, Tang SL.

    BMC Evol Biol. 2008 Apr 23;8:116.PMID: 18430250 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    PHIRE, a deterministic approach to reveal regulatory elements in bacteriophage genomes.

    Lavigne R, Sun WD, Volckaert G.

    Bioinformatics. 2004 Mar 22;20(5):629-35. Epub 2004 Jan 22.PMID: 15033869 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

    Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

    BMC Bioinformatics. 2008 Mar 26;9:170.PMID: 18366802 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Clustering of main orthologs for multiple genomes.

    Fu Z, Jiang T.

    J Bioinform Comput Biol. 2008 Jun;6(3):573-84.PMID: 18574863 [PubMed - indexed for MEDLINE]Related articles

    8.

    Gene prediction in metagenomic fragments: a large scale machine learning approach.

    Hoff KJ, Tech M, Lingner T, Daniel R, Morgenstern B, Meinicke P.

    BMC Bioinformatics. 2008 Apr 28;9:217.PMID: 18442389 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.

    Abeel T, Saeys Y, Rouzé P, Van de Peer Y.

    Bioinformatics. 2008 Jul 1;24(13):i24-31.PMID: 18586720 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Improving the specificity of high-throughput ortholog prediction.

    Fulton DL, Li YY, Laird MR, Horsman BG, Roche FM, Brinkman FS.

    BMC Bioinformatics. 2006 May 28;7:270.PMID: 16729895 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

    Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

    BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.PMID: 17570145 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering.

    Yooseph S, Li W, Sutton G.

    BMC Bioinformatics. 2008 Apr 10;9:182.PMID: 18402669 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    An unsupervised classification scheme for improving predictions of prokaryotic TIS.

    Tech M, Meinicke P.

    BMC Bioinformatics. 2006 Mar 9;7:121.PMID: 16526950 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    CLUSS: clustering of protein sequences based on a new similarity measure.

    Kelil A, Wang S, Brzezinski R, Fleury A.

    BMC Bioinformatics. 2007 Aug 4;8:286.PMID: 17683581 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    CLAGen: a tool for clustering and annotating gene sequences using a suffix tree algorithm.

    Han S, Lee SG, Kim KH, Choi CJ, Kim YH, Hwang KS.

    Biosystems. 2006 Jun;84(3):175-82. Epub 2005 Dec 27.PMID: 16384634 [PubMed - indexed for MEDLINE]Related articles

    16.

    OrthologID: automation of genome-scale ortholog identification within a parsimony framework.

    Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R.

    Bioinformatics. 2006 Mar 15;22(6):699-707. Epub 2006 Jan 12.PMID: 16410324 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    A universal operon predictor for prokaryotic genomes.

    Li G, Che D, Xu Y.

    J Bioinform Comput Biol. 2009 Feb;7(1):19-38.PMID: 19226658 [PubMed - indexed for MEDLINE]Related articles

    18.

    Reticulate representation of evolutionary and functional relationships between phage genomes.

    Lima-Mendez G, Van Helden J, Toussaint A, Leplae R.

    Mol Biol Evol. 2008 Apr;25(4):762-77. Epub 2008 Jan 29.PMID: 18234706 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs.

    Zheng XH, Lu F, Wang ZY, Zhong F, Hoover J, Mural R.

    Bioinformatics. 2005 Mar;21(6):703-10. Epub 2004 Sep 30.PMID: 15458983 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.

    Rosenfeld JA, Sarkar IN, Planet PJ, Figurski DH, DeSalle R.

    Bioinformatics. 2004 Dec 12;20(18):3462-5. Epub 2004 Jul 22.PMID: 15271781 [PubMed - indexed for MEDLINE]Related articlesFree article

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