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    Results: 1 to 20 of 159

    1.

    CORRIE: enzyme sequence annotation with confidence estimates.

    Audit B, Levy ED, Gilks WR, Goldovsky L, Ouzounis CA.

    BMC Bioinformatics. 2007 May 22;8 Suppl 4:S3.PMID: 17570146 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Probabilistic annotation of protein sequences based on functional classifications.

    Levy ED, Ouzounis CA, Gilks WR, Audit B.

    BMC Bioinformatics. 2005 Dec 14;6:302.PMID: 16354297 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts.

    Choi K, Kim S.

    BMC Bioinformatics. 2008 Mar 6;9:145.PMID: 18325116 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.

    Marti-Renom MA, Rossi A, Al-Shahrour F, Davis FP, Pieper U, Dopazo J, Sali A.

    BMC Bioinformatics. 2007 May 22;8 Suppl 4:S4.PMID: 17570147 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Automated protein subfamily identification and classification.

    Brown DP, Krishnamurthy N, Sjölander K.

    PLoS Comput Biol. 2007 Aug;3(8):e160.PMID: 17708678 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    PROMALS web server for accurate multiple protein sequence alignments.

    Pei J, Kim BH, Tang M, Grishin NV.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W649-52. Epub 2007 Apr 22.PMID: 17452345 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    DOMAC: an accurate, hybrid protein domain prediction server.

    Cheng J.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W354-6. Epub 2007 Jun 6.PMID: 17553833 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Prediction of enzyme function by combining sequence similarity and protein interactions.

    Espadaler J, Eswar N, Querol E, Avilés FX, Sali A, Marti-Renom MA, Oliva B.

    BMC Bioinformatics. 2008 May 27;9:249.PMID: 18505562 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes.

    Chou KC.

    Bioinformatics. 2005 Jan 1;21(1):10-9. Epub 2004 Aug 12.PMID: 15308540 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences.

    Srivastava PK, Desai DK, Nandi S, Lynn AM.

    BMC Bioinformatics. 2007 Mar 27;8:104.PMID: 17389042 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter.

    Cserzo M, Eisenhaber F, Eisenhaber B, Simon I.

    Bioinformatics. 2004 Jan 1;20(1):136-7.PMID: 14693825 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Accuracy of structure-based sequence alignment of automatic methods.

    Kim C, Lee B.

    BMC Bioinformatics. 2007 Sep 20;8:355.PMID: 17883866 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Association algorithm to mine the rules that govern enzyme definition and to classify protein sequences.

    Chiu SH, Chen CC, Yuan GF, Lin TH.

    BMC Bioinformatics. 2006 Jun 15;7:304.PMID: 16776838 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Functional representation of enzymes by specific peptides.

    Kunik V, Meroz Y, Solan Z, Sandbank B, Weingart U, Ruppin E, Horn D.

    PLoS Comput Biol. 2007 Aug;3(8):e167. Epub 2007 Jul 11.PMID: 17722976 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

    Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

    BMC Bioinformatics. 2008 Mar 26;9:170.PMID: 18366802 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    ASH structure alignment package: sensitivity and selectivity in domain classification.

    Standley DM, Toh H, Nakamura H.

    BMC Bioinformatics. 2007 Apr 4;8:116.PMID: 17407606 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes.

    Zhou XB, Chen C, Li ZC, Zou XY.

    J Theor Biol. 2007 Oct 7;248(3):546-51. Epub 2007 Jun 9.PMID: 17628605 [PubMed - indexed for MEDLINE]Related articles

    18.

    Fundamentals of massive automatic pairwise alignments of protein sequences: theoretical significance of Z-value statistics.

    Bastien O, Aude JC, Roy S, Maréchal E.

    Bioinformatics. 2004 Mar 1;20(4):534-7. Epub 2004 Jan 22.PMID: 14990449 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.

    Ferragina P, Giancarlo R, Greco V, Manzini G, Valiente G.

    BMC Bioinformatics. 2007 Jul 13;8:252.PMID: 17629909 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    MANIFOLD: protein fold recognition based on secondary structure, sequence similarity and enzyme classification.

    Bindewald E, Cestaro A, Hesser J, Heiler M, Tosatto SC.

    Protein Eng. 2003 Nov;16(11):785-9.PMID: 14631066 [PubMed - indexed for MEDLINE]Related articlesFree article

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