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    Results: 1 to 20 of 299

    1.

    The human phylome.

    Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldón T.

    Genome Biol. 2007;8(6):R109.

    PMID:
    17567924
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    PhylomeDB: a database for genome-wide collections of gene phylogenies.

    Huerta-Cepas J, Bueno A, Dopazo J, Gabaldón T.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D491-6. Epub 2007 Oct 25.

    PMID:
    17962297
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.

    Huerta-Cepas J, Capella-Gutierrez S, Pryszcz LP, Denisov I, Kormes D, Marcet-Houben M, Gabaldón T.

    Nucleic Acids Res. 2011 Jan;39(Database issue):D556-60. Epub 2010 Nov 12.

    PMID:
    21075798
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

    Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

    Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

    PMID:
    14759257
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Evolutionary sequence analysis of complete eukaryote genomes.

    Blair JE, Shah P, Hedges SB.

    BMC Bioinformatics. 2005 Mar 11;6:53.

    PMID:
    15762985
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Comparative study of human mitochondrial proteome reveals extensive protein subcellular relocalization after gene duplications.

    Wang X, Huang Y, Lavrov DV, Gu X.

    BMC Evol Biol. 2009 Nov 30;9:275.

    PMID:
    19948060
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Phylogenetic and chromosomal analyses of multiple gene families syntenic with vertebrate Hox clusters.

    Sundström G, Larsson TA, Larhammar D.

    BMC Evol Biol. 2008 Sep 19;8:254.

    PMID:
    18803835
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    The evolution of protostome GATA factors: molecular phylogenetics, synteny, and intron/exon structure reveal orthologous relationships.

    Gillis WQ, Bowerman BA, Schneider SQ.

    BMC Evol Biol. 2008 Apr 15;8:112.

    PMID:
    18412965
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    The pea aphid phylome: a complete catalogue of evolutionary histories and arthropod orthology and paralogy relationships for Acyrthosiphon pisum genes.

    Huerta-Cepas J, Marcet-Houben M, Pignatelli M, Moya A, Gabaldón T.

    Insect Mol Biol. 2010 Mar;19 Suppl 2:13-21.

    PMID:
    20482636
    [PubMed - indexed for MEDLINE]
    10.

    Genome duplication and gene-family evolution: the case of three OXPHOS gene families.

    De Grassi A, Lanave C, Saccone C.

    Gene. 2008 Sep 15;421(1-2):1-6. Epub 2008 Jun 23. Review.

    PMID:
    18573316
    [PubMed - indexed for MEDLINE]
    11.

    Insights into the evolution of the snail superfamily from metazoan wide molecular phylogenies and expression data in annelids.

    Kerner P, Hung J, Béhague J, Le Gouar M, Balavoine G, Vervoort M.

    BMC Evol Biol. 2009 May 9;9:94.

    PMID:
    19426549
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Modeling gene and genome duplications in eukaryotes.

    Maere S, De Bodt S, Raes J, Casneuf T, Van Montagu M, Kuiper M, Van de Peer Y.

    Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5454-9. Epub 2005 Mar 30.

    PMID:
    15800040
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Assessment of phylogenomic and orthology approaches for phylogenetic inference.

    Dutilh BE, van Noort V, van der Heijden RT, Boekhout T, Snel B, Huynen MA.

    Bioinformatics. 2007 Apr 1;23(7):815-24. Epub 2007 Jan 19.

    PMID:
    17237036
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Three rounds (1R/2R/3R) of genome duplications and the evolution of the glycolytic pathway in vertebrates.

    Steinke D, Hoegg S, Brinkmann H, Meyer A.

    BMC Biol. 2006 Jun 6;4:16.

    PMID:
    16756667
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    The gain and loss of genes during 600 million years of vertebrate evolution.

    Blomme T, Vandepoele K, De Bodt S, Simillion C, Maere S, Van de Peer Y.

    Genome Biol. 2006;7(5):R43. Epub 2006 May 24.

    PMID:
    16723033
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    From phylogenetics to phylogenomics: the evolutionary relationships of insect endosymbiotic gamma-Proteobacteria as a test case.

    Comas I, Moya A, González-Candelas F.

    Syst Biol. 2007 Feb;56(1):1-16.

    PMID:
    17366133
    [PubMed - indexed for MEDLINE]
    17.

    Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.

    Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A.

    BMC Genomics. 2007 Sep 6;8:312.

    PMID:
    17822543
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Genome and protein evolution in eukaryotes.

    Copley RR, Letunic I, Bork P.

    Curr Opin Chem Biol. 2002 Feb;6(1):39-45. Review.

    PMID:
    11827821
    [PubMed - indexed for MEDLINE]
    19.

    Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human.

    Goodstadt L, Ponting CP.

    PLoS Comput Biol. 2006 Sep 29;2(9):e133.

    PMID:
    17009864
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    2R or not 2R: testing hypotheses of genome duplication in early vertebrates.

    Hughes AL, Friedman R.

    J Struct Funct Genomics. 2003;3(1-4):85-93.

    PMID:
    12836688
    [PubMed - indexed for MEDLINE]

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