PubMed

A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors.

Caldana C, Scheible WR, Mueller-Roeber B, Ruzicic S.

Plant Methods. 2007 Jun 8;3:7.PMID: 17559651 [PubMed]Related articlesFree article

A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula.

Kakar K, Wandrey M, Czechowski T, Gaertner T, Scheible WR, Stitt M, Torres-Jerez I, Xiao Y, Redman JC, Wu HC, Cheung F, Town CD, Udvardi MK.

Plant Methods. 2008 Jul 8;4:18.PMID: 18611268 [PubMed - in process]Related articlesFree article

MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.

Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S.

BMC Genomics. 2007 Jul 18;8:242.PMID: 17640358 [PubMed - indexed for MEDLINE]Related articlesFree article

Rice sHsp genes: genomic organization and expression profiling under stress and development.

Sarkar NK, Kim YK, Grover A.

BMC Genomics. 2009 Aug 24;10:393.PMID: 19703271 [PubMed - indexed for MEDLINE]Related articlesFree article

Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice.

Nijhawan A, Jain M, Tyagi AK, Khurana JP.

Plant Physiol. 2008 Feb;146(2):333-50. Epub 2007 Dec 7.PMID: 18065552 [PubMed - indexed for MEDLINE]Related articlesFree article

Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice.

Fang Y, You J, Xie K, Xie W, Xiong L.

Mol Genet Genomics. 2008 Dec;280(6):547-63. Epub 2008 Sep 24.PMID: 18813954 [PubMed - indexed for MEDLINE]Related articles

Identification and validation of reference genes for quantitative RT-PCR normalization in wheat.

Paolacci AR, Tanzarella OA, Porceddu E, Ciaffi M.

BMC Mol Biol. 2009 Feb 20;10:11.PMID: 19232096 [PubMed - indexed for MEDLINE]Related articlesFree article

Validation of putative reference genes for gene expression studies in human hepatocellular carcinoma using real-time quantitative RT-PCR.

Cicinnati VR, Shen Q, Sotiropoulos GC, Radtke A, Gerken G, Beckebaum S.

BMC Cancer. 2008 Nov 27;8:350.PMID: 19036168 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice.

Jain M, Khurana JP.

FEBS J. 2009 Jun;276(11):3148-62. Epub 2009 Apr 28.PMID: 19490115 [PubMed - indexed for MEDLINE]Related articles

Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy.

Jung KH, Dardick C, Bartley LE, Cao P, Phetsom J, Canlas P, Seo YS, Shultz M, Ouyang S, Yuan Q, Frank BC, Ly E, Zheng L, Jia Y, Hsia AP, An K, Chou HH, Rocke D, Lee GC, Schnable PS, An G, Buell CR, Ronald PC.

PLoS One. 2008 Oct 6;3(10):e3337.PMID: 18836531 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray.

Satoh K, Doi K, Nagata T, Kishimoto N, Suzuki K, Otomo Y, Kawai J, Nakamura M, Hirozane-Kishikawa T, Kanagawa S, Arakawa T, Takahashi-Iida J, Murata M, Ninomiya N, Sasaki D, Fukuda S, Tagami M, Yamagata H, Kurita K, Kamiya K, Yamamoto M, Kikuta A, Bito T, Fujitsuka N, Ito K, Kanamori H, Choi IR, Nagamura Y, Matsumoto T, Murakami K, Matsubara K, Carninci P, Hayashizaki Y, Kikuchi S.

PLoS One. 2007 Nov 28;2(11):e1235.PMID: 18043742 [PubMed - indexed for MEDLINE]Related articlesFree article

Selection of reference genes for quantitative real-time PCR expression studies in the apomictic and sexual grass Brachiaria brizantha.

Silveira ED, Alves-Ferreira M, Guimarães LA, da Silva FR, Carneiro VT.

BMC Plant Biol. 2009 Jul 2;9:84.PMID: 19573233 [PubMed - indexed for MEDLINE]Related articlesFree article

High-coverage profiling analysis of genes expressed during rice seed development, using an improved amplified fragment length polymorphism technique.

Suzuki K, Hattori A, Tanaka S, Masumura T, Abe M, Kitamura S.

Funct Integr Genomics. 2005 Apr;5(2):117-27. Epub 2004 Oct 13.PMID: 15490295 [PubMed - indexed for MEDLINE]Related articles

Sequence and expression analysis of the thioredoxin protein gene family in rice.

Nuruzzaman M, Gupta M, Zhang C, Wang L, Xie W, Xiong L, Zhang Q, Lian X.

Mol Genet Genomics. 2008 Aug;280(2):139-51. Epub 2008 May 20.PMID: 18491141 [PubMed - indexed for MEDLINE]Related articles

Development and validation of a gene expression oligo microarray for the gilthead sea bream (Sparus aurata).

Ferraresso S, Vitulo N, Mininni AN, Romualdi C, Cardazzo B, Negrisolo E, Reinhardt R, Canario AV, Patarnello T, Bargelloni L.

BMC Genomics. 2008 Dec 3;9:580.PMID: 19055773 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica).

Ray S, Agarwal P, Arora R, Kapoor S, Tyagi AK.

Mol Genet Genomics. 2007 Nov;278(5):493-505. Epub 2007 Jul 18.PMID: 17636330 [PubMed - indexed for MEDLINE]Related articles

A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes.

Seo YS, Sriariyanun M, Wang L, Pfeiff J, Phetsom J, Lin Y, Jung KH, Chou HH, Bogdanove A, Ronald P.

BMC Microbiol. 2008 Jun 18;8:99.PMID: 18564427 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression profiling of rice cultivars differing in their tolerance to long-term drought stress.

Degenkolbe T, Do PT, Zuther E, Repsilber D, Walther D, Hincha DK, Köhl KI.

Plant Mol Biol. 2009 Jan;69(1-2):133-53. Epub 2008 Oct 19.PMID: 18931976 [PubMed - indexed for MEDLINE]Related articlesFree article

Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L) and its parental lines based on SAGE data.

Song S, Qu H, Chen C, Hu S, Yu J.

BMC Plant Biol. 2007 Sep 19;7:49.PMID: 17877838 [PubMed - indexed for MEDLINE]Related articlesFree article

Heterologous oligonucleotide microarrays for transcriptomics in a non-model species; a proof-of-concept study of drought stress in Musa.

Davey MW, Graham NS, Vanholme B, Swennen R, May ST, Keulemans J.

BMC Genomics. 2009 Sep 16;10:436.PMID: 19758430 [PubMed - indexed for MEDLINE]Related articlesFree article