PubMed

Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions.

Corà D, Di Cunto F, Caselle M, Provero P.

BMC Bioinformatics. 2007 May 24;8:174.PMID: 17524134 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila.

Gu J, Fu H, Zhang X, Li Y.

BMC Bioinformatics. 2007 Nov 8;8:432.PMID: 17996040 [PubMed - indexed for MEDLINE]Related articlesFree article

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals.

Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M.

Nature. 2005 Mar 17;434(7031):338-45. Epub 2005 Feb 27.PMID: 15735639 [PubMed - indexed for MEDLINE]Related articles

Over-represented sequences located on 3' UTRs are potentially involved in regulatory functions.

Yoon K, Ko D, Doderer M, Livi CB, Penalva LO.

RNA Biol. 2008 Oct-Dec;5(4):255-62. Epub 2008 Oct 3.PMID: 18971640 [PubMed - indexed for MEDLINE]Related articlesFree article

Most mammalian mRNAs are conserved targets of microRNAs.

Friedman RC, Farh KK, Burge CB, Bartel DP.

Genome Res. 2009 Jan;19(1):92-105. Epub 2008 Oct 27.PMID: 18955434 [PubMed - indexed for MEDLINE]Related articlesFree article

The relationship between the evolution of microRNA targets and the length of their UTRs.

Cheng C, Bhardwaj N, Gerstein M.

BMC Genomics. 2009 Sep 14;10:431.PMID: 19751524 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular architecture of a miRNA-regulated 3' UTR.

Didiano D, Hobert O.

RNA. 2008 Jul;14(7):1297-317. Epub 2008 May 7.PMID: 18463285 [PubMed - indexed for MEDLINE]Related articlesFree article

New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites.

Lee I, Ajay SS, Yook JI, Kim HS, Hong SH, Kim NH, Dhanasekaran SM, Chinnaiyan AM, Athey BD.

Genome Res. 2009 Jul;19(7):1175-83. Epub 2009 Mar 31.PMID: 19336450 [PubMed - indexed for MEDLINE]Related articlesFree article

Revealing posttranscriptional regulatory elements through network-level conservation.

Chan CS, Elemento O, Tavazoie S.

PLoS Comput Biol. 2005 Dec;1(7):e69. Epub 2005 Dec 9.PMID: 16355253 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction and preliminary validation of oncogene regulation by miRNAs.

Koscianska E, Baev V, Skreka K, Oikonomaki K, Rusinov V, Tabler M, Kalantidis K.

BMC Mol Biol. 2007 Sep 18;8:79.PMID: 17877811 [PubMed - indexed for MEDLINE]Related articlesFree article

MicroRNA targeting specificity in mammals: determinants beyond seed pairing.

Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP.

Mol Cell. 2007 Jul 6;27(1):91-105.PMID: 17612493 [PubMed - indexed for MEDLINE]Related articles

Ab initio identification of human microRNAs based on structure motifs.

Brameier M, Wiuf C.

BMC Bioinformatics. 2007 Dec 18;8:478.PMID: 18088431 [PubMed - indexed for MEDLINE]Related articlesFree article

MicroRNA prediction with a novel ranking algorithm based on random walks.

Xu Y, Zhou X, Zhang W.

Bioinformatics. 2008 Jul 1;24(13):i50-8.PMID: 18586744 [PubMed - indexed for MEDLINE]Related articlesFree article

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.

Lewis BP, Burge CB, Bartel DP.

Cell. 2005 Jan 14;120(1):15-20.PMID: 15652477 [PubMed - indexed for MEDLINE]Related articles

Patterns in interspecies similarity correlate with nucleotide composition in mammalian 3'UTRs.

Shabalina SA, Ogurtsov AY, Lipman DJ, Kondrashov AS.

Nucleic Acids Res. 2003 Sep 15;31(18):5433-9.PMID: 12954780 [PubMed - indexed for MEDLINE]Related articlesFree article

Regulatory circuit of human microRNA biogenesis.

Lee J, Li Z, Brower-Sinning R, John B.

PLoS Comput Biol. 2007 Apr 20;3(4):e67. Epub 2007 Feb 27.PMID: 17447837 [PubMed - indexed for MEDLINE]Related articlesFree article

Spatial preferences of microRNA targets in 3' untranslated regions.

Majoros WH, Ohler U.

BMC Genomics. 2007 Jun 7;8:152.PMID: 17555584 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species.

Wang X, Gu J, Zhang MQ, Li Y.

Bioinformatics. 2008 Jan 15;24(2):165-71. Epub 2007 Nov 24.PMID: 18037683 [PubMed - indexed for MEDLINE]Related articlesFree article

Bounded search for de novo identification of degenerate cis-regulatory elements.

Carlson JM, Chakravarty A, Khetani RS, Gross RH.

BMC Bioinformatics. 2006 May 15;7:254.PMID: 16700920 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of regulatory modules comprising microRNAs and target genes.

Yoon S, De Micheli G.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii93-100.PMID: 16204133 [PubMed - indexed for MEDLINE]Related articlesFree article