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    Results: 1 to 20 of 137

    1.

    Computational and biological inference of gene regulatory networks of the LINE-1 retrotransposon.

    Ramos KS, He Q, Kalbfleisch T, Montoya-Durango DE, Teneng I, Stribinskis V, Brun M.

    Genomics. 2007 Aug;90(2):176-85. Epub 2007 May 22.PMID: 17521869 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes.

    Han JS, Szak ST, Boeke JD.

    Nature. 2004 May 20;429(6989):268-74.PMID: 15152245 [PubMed - indexed for MEDLINE]Related articles

    3.

    In silico discovery of transcription regulatory elements in Plasmodium falciparum.

    Young JA, Johnson JR, Benner C, Yan SF, Chen K, Le Roch KG, Zhou Y, Winzeler EA.

    BMC Genomics. 2008 Feb 7;9:70.PMID: 18257930 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Nuclear receptor location analyses in mammalian genomes: from gene regulation to regulatory networks.

    Deblois G, Giguère V.

    Mol Endocrinol. 2008 Sep;22(9):1999-2011. Epub 2008 Feb 21. Review.PMID: 18292239 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Integration of biological networks and gene expression data using Cytoscape.

    Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD.

    Nat Protoc. 2007;2(10):2366-82.PMID: 17947979 [PubMed - indexed for MEDLINE]Related articles

    6.

    Inferring regulatory networks.

    Li H, Xuan J, Wang Y, Zhan M.

    Front Biosci. 2008 Jan 1;13:263-75. Review.PMID: 17981545 [PubMed - indexed for MEDLINE]Related articles

    7.

    Genome-wide B1 retrotransposon binds the transcription factors dioxin receptor and Slug and regulates gene expression in vivo.

    Roman AC, Benitez DA, Carvajal-Gonzalez JM, Fernandez-Salguero PM.

    Proc Natl Acad Sci U S A. 2008 Feb 5;105(5):1632-7. Epub 2008 Jan 25.PMID: 18223155 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Validation and refinement of gene-regulatory pathways on a network of physical interactions.

    Yeang CH, Mak HC, McCuine S, Workman C, Jaakkola T, Ideker T.

    Genome Biol. 2005;6(7):R62. Epub 2005 Jul 1.PMID: 15998451 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Transcriptional regulatory network analysis during epithelial-mesenchymal transformation of retinal pigment epithelium.

    Pratt CH, Vadigepalli R, Chakravarthula P, Gonye GE, Philp NJ, Grunwald GB.

    Mol Vis. 2008 Aug 4;14:1414-28.PMID: 18682805 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Molecular characterization of a retrotransposon in the Rhynchosciara americana genome and its association with telomere.

    Rezende-Teixeira P, Siviero F, Brandão AS, Santelli RV, Machado-Santelli GM.

    Chromosome Res. 2008;16(5):729-42. Epub 2008 Jun 7.PMID: 18528768 [PubMed - indexed for MEDLINE]Related articles

    11.

    Activation of human long interspersed nuclear element 1 retrotransposition by benzo(a)pyrene, an ubiquitous environmental carcinogen.

    Stribinskis V, Ramos KS.

    Cancer Res. 2006 Mar 1;66(5):2616-20.PMID: 16510580 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Context-specific regulation of LINE-1.

    Teneng I, Stribinskis V, Ramos KS.

    Genes Cells. 2007 Oct;12(10):1101-10.PMID: 17903170 [PubMed - indexed for MEDLINE]Related articles

    13.

    Function approximation approach to the inference of reduced NGnet models of genetic networks.

    Kimura S, Sonoda K, Yamane S, Maeda H, Matsumura K, Hatakeyama M.

    BMC Bioinformatics. 2008 Jan 14;9:23.PMID: 18194576 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Global similarity and local divergence in human and mouse gene co-expression networks.

    Tsaparas P, Mariño-Ramírez L, Bodenreider O, Koonin EV, Jordan IK.

    BMC Evol Biol. 2006 Sep 12;6:70.PMID: 16968540 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

    Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

    BMC Bioinformatics. 2008 Apr 21;9:203.PMID: 18426580 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Dynamical pathway analysis.

    Xiong H, Choe Y.

    BMC Syst Biol. 2008 Jan 27;2:9.PMID: 18221557 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Progress in understanding the biology of the human mutagen LINE-1.

    Babushok DV, Kazazian HH Jr.

    Hum Mutat. 2007 Jun;28(6):527-39. Review.PMID: 17309057 [PubMed - indexed for MEDLINE]Related articles

    18.

    Learning biological networks: from modules to dynamics.

    Bonneau R.

    Nat Chem Biol. 2008 Nov;4(11):658-64. Review.PMID: 18936750 [PubMed - indexed for MEDLINE]Related articles

    19.

    Genetic networks of cooperative redox regulation of osteopontin.

    Partridge CR, He Q, Brun M, Ramos KS.

    Matrix Biol. 2008 Jun;27(5):462-74. Epub 2008 Apr 18.PMID: 18378437 [PubMed - indexed for MEDLINE]Related articles

    20.

    Genetic networks for the functional study of genomes.

    Pisabarro AG, Pérez G, Lavín JL, Ramírez L.

    Brief Funct Genomic Proteomic. 2008 Jul;7(4):249-63. Epub 2008 Jun 25.PMID: 18579617 [PubMed - indexed for MEDLINE]Related articles

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