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Evaluating dosage compensation as a cause of duplicate gene retention in Paramecium tetraurelia.

Hughes T, Ekman D, Ardawatia H, Elofsson A, Liberles DA.

Genome Biol. 2007;8(5):213. Review.PMID: 17521457 [PubMed - indexed for MEDLINE]Related articlesFree article

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.

Aury JM, Jaillon O, Duret L, Noel B, Jubin C, Porcel BM, Ségurens B, Daubin V, Anthouard V, Aiach N, Arnaiz O, Billaut A, Beisson J, Blanc I, Bouhouche K, Câmara F, Duharcourt S, Guigo R, Gogendeau D, Katinka M, Keller AM, Kissmehl R, Klotz C, Koll F, Le Mouël A, Lepère G, Malinsky S, Nowacki M, Nowak JK, Plattner H, Poulain J, Ruiz F, Serrano V, Zagulski M, Dessen P, Bétermier M, Weissenbach J, Scarpelli C, Schächter V, Sperling L, Meyer E, Cohen J, Wincker P.

Nature. 2006 Nov 9;444(7116):171-8. Epub 2006 Nov 1.PMID: 17086204 [PubMed - indexed for MEDLINE]Related articles

Genome evolution: a double take for Paramecium.

Chalker DL, Stover NA.

Curr Biol. 2007 Feb 6;17(3):R97-9.PMID: 17276910 [PubMed - indexed for MEDLINE]Related articles

Differential retention of metabolic genes following whole-genome duplication.

Gout JF, Duret L, Kahn D.

Mol Biol Evol. 2009 May;26(5):1067-72. Epub 2009 Feb 13.PMID: 19218282 [PubMed - indexed for MEDLINE]Related articles

A kinome of 2600 in the ciliate Paramecium tetraurelia.

Bemm F, Schwarz R, Förster F, Schultz J.

FEBS Lett. 2009 Nov 19;583(22):3589-92. Epub 2009 Oct 17.PMID: 19840790 [PubMed - indexed for MEDLINE]Related articles

ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data.

Arnaiz O, Cain S, Cohen J, Sperling L.

Nucleic Acids Res. 2007 Jan;35(Database issue):D439-44. Epub 2006 Nov 16.PMID: 17142227 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide evolutionary analysis of the noncoding RNA genes and noncoding DNA of Paramecium tetraurelia.

Chen CL, Zhou H, Liao JY, Qu LH, Amar L.

RNA. 2009 Apr;15(4):503-14. Epub 2009 Feb 13.PMID: 19218550 [PubMed - indexed for MEDLINE]Related articlesFree article

RNA-mediated programming of developmental genome rearrangements in Paramecium tetraurelia.

Garnier O, Serrano V, Duharcourt S, Meyer E.

Mol Cell Biol. 2004 Sep;24(17):7370-9.PMID: 15314149 [PubMed - indexed for MEDLINE]Related articlesFree article

The actin multigene family of Paramecium tetraurelia.

Sehring IM, Mansfeld J, Reiner C, Wagner E, Plattner H, Kissmehl R.

BMC Genomics. 2007 Mar 28;8:82.PMID: 17391512 [PubMed - indexed for MEDLINE]Related articlesFree article

Proposed genetic nomenclature rules for Tetrahymena thermophila, Paramecium primaurelia and Paramecium tetraurelia. The Seventh International Meeting on Ciliate Molecular Biology Genetics Nomenclature.

[No authors listed]

Genetics. 1998 May;149(1):459-62. No abstract available. PMID: 9660671 [PubMed - indexed for MEDLINE]Related articlesFree article

High coding density on the largest Paramecium tetraurelia somatic chromosome.

Zagulski M, Nowak JK, Le Mouël A, Nowacki M, Migdalski A, Gromadka R, Noël B, Blanc I, Dessen P, Wincker P, Keller AM, Cohen J, Meyer E, Sperling L.

Curr Biol. 2004 Aug 10;14(15):1397-404.PMID: 15296759 [PubMed - indexed for MEDLINE]Related articles

DUPCAR: reconstructing contiguous ancestral regions with duplications.

Ma J, Ratan A, Raney BJ, Suh BB, Zhang L, Miller W, Haussler D.

J Comput Biol. 2008 Oct;15(8):1007-27.PMID: 18774902 [PubMed - indexed for MEDLINE]Related articles

PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia.

Baudry C, Malinsky S, Restituito M, Kapusta A, Rosa S, Meyer E, Bétermier M.

Genes Dev. 2009 Nov 1;23(21):2478-83.PMID: 19884254 [PubMed - indexed for MEDLINE]Related articles

Cross-study analysis of genomic data defines the ciliate multigenic epiplasmin family: strategies for functional analysis in Paramecium tetraurelia.

Damaj R, Pomel S, Bricheux G, Coffe G, Viguès B, Ravet V, Bouchard P.

BMC Evol Biol. 2009 Jun 3;9:125.PMID: 19493334 [PubMed - indexed for MEDLINE]Related articlesFree article

Large global effective population sizes in Paramecium.

Snoke MS, Berendonk TU, Barth D, Lynch M.

Mol Biol Evol. 2006 Dec;23(12):2474-9. Epub 2006 Sep 20.PMID: 16987953 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes.

Edger PP, Pires JC.

Chromosome Res. 2009;17(5):699-717. Review.PMID: 19802709 [PubMed - indexed for MEDLINE]Related articles

A mutation in the flanking 5'-TA-3' dinucleotide prevents excision of an internal eliminated sequence from the Paramecium tetraurelia genome.

Mayer KM, Forney JD.

Genetics. 1999 Feb;151(2):597-604.PMID: 9927454 [PubMed - indexed for MEDLINE]Related articlesFree article

Evidence for transcriptional self-regulation of variable surface antigens in Paramecium tetraurelia.

Thai KY, Forney JD.

Gene Expr. 1999;8(5-6):263-72.PMID: 10947076 [PubMed - indexed for MEDLINE]Related articles

Non-Mendelian inheritance induced by gene amplification in the germ nucleus of Paramecium tetraurelia.

Matsuda A, Takahashi M.

Genetics. 2005 Jan;169(1):137-47. Epub 2004 Sep 15.PMID: 15371356 [PubMed - indexed for MEDLINE]Related articlesFree article

Patterns of codon usage in two ciliates that reassign the genetic code: Tetrahymena thermophila and Paramecium tetraurelia.

Salim HM, Ring KL, Cavalcanti AR.

Protist. 2008 Apr;159(2):283-98. Epub 2008 Jan 22.PMID: 18207458 [PubMed - indexed for MEDLINE]Related articles