PubMed

The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats.

Grissa I, Vergnaud G, Pourcel C.

BMC Bioinformatics. 2007 May 23;8:172.PMID: 17521438 [PubMed - indexed for MEDLINE]Related articlesFree article

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.

Grissa I, Vergnaud G, Pourcel C.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7. Epub 2007 May 30.PMID: 17537822 [PubMed - indexed for MEDLINE]Related articlesFree article

Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin.

Bolotin A, Quinquis B, Sorokin A, Ehrlich SD.

Microbiology. 2005 Aug;151(Pt 8):2551-61.PMID: 16079334 [PubMed - indexed for MEDLINE]Related articlesFree article

Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus.

Horvath P, Romero DA, Coûté-Monvoisin AC, Richards M, Deveau H, Moineau S, Boyaval P, Fremaux C, Barrangou R.

J Bacteriol. 2008 Feb;190(4):1401-12. Epub 2007 Dec 7.PMID: 18065539 [PubMed - indexed for MEDLINE]Related articlesFree article

CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats.

Bland C, Ramsey TL, Sabree F, Lowe M, Brown K, Kyrpides NC, Hugenholtz P.

BMC Bioinformatics. 2007 Jun 18;8:209.PMID: 17577412 [PubMed - indexed for MEDLINE]Related articlesFree article

CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.

Pourcel C, Salvignol G, Vergnaud G.

Microbiology. 2005 Mar;151(Pt 3):653-63.PMID: 15758212 [PubMed - indexed for MEDLINE]Related articlesFree article

A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes.

Haft DH, Selengut J, Mongodin EF, Nelson KE.

PLoS Comput Biol. 2005 Nov;1(6):e60. Epub 2005 Nov 11.PMID: 16292354 [PubMed - indexed for MEDLINE]Related articlesFree article

CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats.

Grissa I, Vergnaud G, Pourcel C.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W145-8. Epub 2008 Apr 28.PMID: 18442988 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolutionary conservation of sequence and secondary structures in CRISPR repeats.

Kunin V, Sorek R, Hugenholtz P.

Genome Biol. 2007;8(4):R61.PMID: 17442114 [PubMed - indexed for MEDLINE]Related articlesFree article

CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea.

Sorek R, Kunin V, Hugenholtz P.

Nat Rev Microbiol. 2008 Mar;6(3):181-6. Review.PMID: 18157154 [PubMed - indexed for MEDLINE]Related articles

Identification of genes that are associated with DNA repeats in prokaryotes.

Jansen R, Embden JD, Gaastra W, Schouls LM.

Mol Microbiol. 2002 Mar;43(6):1565-75.PMID: 11952905 [PubMed - indexed for MEDLINE]Related articles

Short motif sequences determine the targets of the prokaryotic CRISPR defence system.

Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C.

Microbiology. 2009 Mar;155(Pt 3):733-40.PMID: 19246744 [PubMed - indexed for MEDLINE]Related articles

Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Deveau H, Barrangou R, Garneau JE, Labonté J, Fremaux C, Boyaval P, Romero DA, Horvath P, Moineau S.

J Bacteriol. 2008 Feb;190(4):1390-400. Epub 2007 Dec 7.PMID: 18065545 [PubMed - indexed for MEDLINE]Related articlesFree article

PILER-CR: fast and accurate identification of CRISPR repeats.

Edgar RC.

BMC Bioinformatics. 2007 Jan 20;8:18.PMID: 17239253 [PubMed - indexed for MEDLINE]Related articlesFree article

Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals.

Reneker J, Shyu CR.

BMC Bioinformatics. 2005 May 3;6:111.PMID: 15869708 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of the three Yersinia pestis CRISPR loci provides new tools for phylogenetic studies and possibly for the investigation of ancient DNA.

Vergnaud G, Li Y, Gorgé O, Cui Y, Song Y, Zhou D, Grissa I, Dentovskaya SV, Platonov ME, Rakin A, Balakhonov SV, Neubauer H, Pourcel C, Anisimov AP, Yang R.

Adv Exp Med Biol. 2007;603:327-38.PMID: 17966429 [PubMed - indexed for MEDLINE]Related articles

Clustered regularly interspaced short palindromic repeats (CRISPRs) for the genotyping of bacterial pathogens.

Grissa I, Vergnaud G, Pourcel C.

Methods Mol Biol. 2009;551:105-16.PMID: 19521870 [PubMed - indexed for MEDLINE]Related articles

Distribution of CRISPR spacer matches in viruses and plasmids of crenarchaeal acidothermophiles and implications for their inhibitory mechanism.

Shah SA, Hansen NR, Garrett RA.

Biochem Soc Trans. 2009 Feb;37(Pt 1):23-8.PMID: 19143596 [PubMed - indexed for MEDLINE]Related articles

The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes.

Godde JS, Bickerton A.

J Mol Evol. 2006 Jun;62(6):718-29. Epub 2006 Apr 11.PMID: 16612537 [PubMed - indexed for MEDLINE]Related articles

CRISPR provides acquired resistance against viruses in prokaryotes.

Barrangou R, Fremaux C, Deveau H, Richards M, Boyaval P, Moineau S, Romero DA, Horvath P.

Science. 2007 Mar 23;315(5819):1709-12.PMID: 17379808 [PubMed - indexed for MEDLINE]Related articlesFree article