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    Results: 1 to 20 of 364

    1.

    Distinguishing enzymes using metabolome data for the hybrid dynamic/static method.

    Ishii N, Nakayama Y, Tomita M.

    Theor Biol Med Model. 2007 May 20;4:19.PMID: 17511884 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Hybrid dynamic/static method for large-scale simulation of metabolism.

    Yugi K, Nakayama Y, Kinoshita A, Tomita M.

    Theor Biol Med Model. 2005 Oct 4;2:42.PMID: 16202166 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Extraction of elementary rate constants from global network analysis of E. coli central metabolism.

    Zhao J, Ridgway D, Broderick G, Kovalenko A, Ellison M.

    BMC Syst Biol. 2008 May 7;2:41.PMID: 18462493 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Dynamic simulation of an in vitro multi-enzyme system.

    Ishii N, Suga Y, Hagiya A, Watanabe H, Mori H, Yoshino M, Tomita M.

    FEBS Lett. 2007 Feb 6;581(3):413-20. Epub 2007 Jan 12.PMID: 17239859 [PubMed - indexed for MEDLINE]Related articles

    5.

    A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics.

    Nikerel IE, van Winden WA, van Gulik WM, Heijnen JJ.

    BMC Bioinformatics. 2006 Dec 21;7:540.PMID: 17184531 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    A simplified method for power-law modelling of metabolic pathways from time-course data and steady-state flux profiles.

    Kitayama T, Kinoshita A, Sugimoto M, Nakayama Y, Tomita M.

    Theor Biol Med Model. 2006 Jul 17;3:24.PMID: 16846504 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    k-Cone analysis: determining all candidate values for kinetic parameters on a network scale.

    Famili I, Mahadevan R, Palsson BO.

    Biophys J. 2005 Mar;88(3):1616-25. Epub 2004 Dec 30.PMID: 15626710 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Model reduction and a priori kinetic parameter identifiability analysis using metabolome time series for metabolic reaction networks with linlog kinetics.

    Nikerel IE, van Winden WA, Verheijen PJ, Heijnen JJ.

    Metab Eng. 2009 Jan;11(1):20-30. Epub 2008 Aug 5.PMID: 18718548 [PubMed - indexed for MEDLINE]Related articles

    9.

    Dynamic modeling of the central carbon metabolism of Escherichia coli.

    Chassagnole C, Noisommit-Rizzi N, Schmid JW, Mauch K, Reuss M.

    Biotechnol Bioeng. 2002 Jul 5;79(1):53-73.PMID: 17590932 [PubMed - indexed for MEDLINE]Related articles

    10.

    Estimating parameters for generalized mass action models with connectivity information.

    Ko CL, Voit EO, Wang FS.

    BMC Bioinformatics. 2009 May 11;10:140.PMID: 19432964 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    A hybrid model of anaerobic E. coli GJT001: combination of elementary flux modes and cybernetic variables.

    Kim JI, Varner JD, Ramkrishna D.

    Biotechnol Prog. 2008 Sep-Oct;24(5):993-1006.PMID: 19194908 [PubMed - indexed for MEDLINE]Related articles

    12.

    New experimental and theoretical tools for metabolic engineering of micro-organisms.

    Heijnen JJ.

    Meded Rijksuniv Gent Fak Landbouwkd Toegep Biol Wet. 2001;66(3a):11-30.PMID: 15954559 [PubMed - indexed for MEDLINE]Related articles

    13.

    Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws--a promising method for speeding up the kinetic modelling of complex metabolic networks.

    Bulik S, Grimbs S, Huthmacher C, Selbig J, Holzhütter HG.

    FEBS J. 2009 Jan;276(2):410-24.PMID: 19137631 [PubMed - indexed for MEDLINE]Related articles

    14.

    Integration of enzyme activities into metabolic flux distributions by elementary mode analysis.

    Kurata H, Zhao Q, Okuda R, Shimizu K.

    BMC Syst Biol. 2007 Jul 18;1:31.PMID: 17640350 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Optimal re-design of primary metabolism in Escherichia coli using linlog kinetics.

    Visser D, Schmid JW, Mauch K, Reuss M, Heijnen JJ.

    Metab Eng. 2004 Oct;6(4):378-90.PMID: 15491866 [PubMed - indexed for MEDLINE]Related articles

    16.

    Kinetic modeling as a tool to integrate multilevel dynamic experimental data.

    Mogilevskaya E, Bagrova N, Plyusnina T, Gizzatkulov N, Metelkin E, Goryacheva E, Smirnov S, Kosinsky Y, Dorodnov A, Peskov K, Karelina T, Goryanin I, Demin O.

    Methods Mol Biol. 2009;563:197-218.PMID: 19597787 [PubMed - indexed for MEDLINE]Related articles

    17.

    Towards kinetic modeling of global metabolic networks: Methylobacterium extorquens AM1 growth as validation.

    Ao P, Lee LW, Lidstrom ME, Yin L, Zhu X.

    Sheng Wu Gong Cheng Xue Bao. 2008 Jun;24(6):980-94.PMID: 18807980 [PubMed - indexed for MEDLINE]Related articles

    18.

    Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data.

    Liebermeister W, Klipp E.

    Theor Biol Med Model. 2006 Dec 15;3:42.PMID: 17173670 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A structured, minimal parameter model of the central nitrogen metabolism in Saccharomyces cerevisiae: the prediction of the behavior of mutants.

    van Riel NA, Giuseppin ML, TerSchure EG, Verrips CT.

    J Theor Biol. 1998 Apr 21;191(4):397-414.PMID: 9631574 [PubMed - indexed for MEDLINE]Related articles

    20.

    Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli.

    Bennett BD, Kimball EH, Gao M, Osterhout R, Van Dien SJ, Rabinowitz JD.

    Nat Chem Biol. 2009 Aug;5(8):593-9. Epub 2009 Jun 28.PMID: 19561621 [PubMed - indexed for MEDLINE]Related articlesFree article

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