PubMed

Tilescope: online analysis pipeline for high-density tiling microarray data.

Zhang ZD, Rozowsky J, Lam HY, Du J, Snyder M, Gerstein M.

Genome Biol. 2007;8(5):R81.PMID: 17501994 [PubMed - indexed for MEDLINE]Related articlesFree article

ExpressYourself: A modular platform for processing and visualizing microarray data.

Luscombe NM, Royce TE, Bertone P, Echols N, Horak CE, Chang JT, Snyder M, Gerstein M.

Nucleic Acids Res. 2003 Jul 1;31(13):3477-82.PMID: 12824348 [PubMed - indexed for MEDLINE]Related articlesFree article

CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.

Xiang Z, Qin ZS, He Y.

Bioinformatics. 2007 Jul 15;23(14):1843-5. Epub 2007 May 7.PMID: 17485426 [PubMed - indexed for MEDLINE]Related articlesFree article

ArrayExplorer, a program in Visual Basic for robust and accurate filter cDNA array analysis.

Patriotis PC, Querec TD, Gruver BN, Brown TR, Patriotis C.

Biotechniques. 2001 Oct;31(4):862, 864, 866-8, 870, 872.PMID: 11680718 [PubMed - indexed for MEDLINE]Related articles

WebArray: an online platform for microarray data analysis.

Xia X, McClelland M, Wang Y.

BMC Bioinformatics. 2005 Dec 21;6:306.PMID: 16371165 [PubMed - indexed for MEDLINE]Related articlesFree article

RACE: Remote Analysis Computation for gene Expression data.

Psarros M, Heber S, Sick M, Thoppae G, Harshman K, Sick B.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W638-43.PMID: 15980552 [PubMed - indexed for MEDLINE]Related articlesFree article

EzArray: a web-based highly automated Affymetrix expression array data management and analysis system.

Zhu Y, Zhu Y, Xu W.

BMC Bioinformatics. 2008 Jan 24;9:46.PMID: 18218103 [PubMed - indexed for MEDLINE]Related articlesFree article

RReportGenerator: automatic reports from routine statistical analysis using R.

Raffelsberger W, Krause Y, Moulinier L, Kieffer D, Morand AL, Brino L, Poch O.

Bioinformatics. 2008 Jan 15;24(2):276-8. Epub 2007 Nov 24.PMID: 18037684 [PubMed - indexed for MEDLINE]Related articlesFree article

Codelink: an R package for analysis of GE healthcare gene expression bioarrays.

Diez D, Alvarez R, Dopazo A.

Bioinformatics. 2007 May 1;23(9):1168-9. Epub 2007 Mar 7.PMID: 17344240 [PubMed - indexed for MEDLINE]Related articlesFree article

ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics.

Chung HJ, Kim M, Park CH, Kim J, Kim JH.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W460-4.PMID: 15215430 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational strategies for analyzing data in gene expression microarray experiments.

Aittokallio T, Kurki M, Nevalainen O, Nikula T, West A, Lahesmaa R.

J Bioinform Comput Biol. 2003 Oct;1(3):541-86. Review.PMID: 15290769 [PubMed - indexed for MEDLINE]Related articles

GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments.

Keller A, Backes C, Al-Awadhi M, Gerasch A, Küntzer J, Kohlbacher O, Kaufmann M, Lenhof HP.

BMC Bioinformatics. 2008 Dec 22;9:552.PMID: 19099609 [PubMed - indexed for MEDLINE]Related articlesFree article

Mining microarray data at NCBI's Gene Expression Omnibus (GEO)*.

Barrett T, Edgar R.

Methods Mol Biol. 2006;338:175-90.PMID: 16888359 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context.

Weniger M, Engelmann JC, Schultz J.

BMC Bioinformatics. 2007 Jun 2;8:179.PMID: 17543125 [PubMed - indexed for MEDLINE]Related articlesFree article

A dynamic, web-accessible resource to process raw microarray scan data into consolidated gene expression values: importance of replication.

Le Meur N, Lamirault G, Bihouée A, Steenman M, Bédrine-Ferran H, Teusan R, Ramstein G, Léger JJ.

Nucleic Acids Res. 2004 Oct 8;32(18):5349-58. Print 2004.PMID: 15475389 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays.

Scacheri PC, Crawford GE, Davis S.

Methods Enzymol. 2006;411:270-82. Review.PMID: 16939795 [PubMed - indexed for MEDLINE]Related articles

arrayQCplot: software for checking the quality of microarray data.

Lee EK, Yi SG, Park T.

Bioinformatics. 2006 Sep 15;22(18):2305-7. Epub 2006 Jul 24.PMID: 16864592 [PubMed - indexed for MEDLINE]Related articlesFree article

Array-A-Lizer: a serial DNA microarray quality analyzer.

Petri A, Fleckner J, Matthiessen MW.

BMC Bioinformatics. 2004 Feb 9;5:12.PMID: 15018654 [PubMed - indexed for MEDLINE]Related articlesFree article

Assessing statistical significance in microarray experiments using the distance between microarrays.

Hayden D, Lazar P, Schoenfeld D; Inflammation and the Host Response to Injury Investigators.

PLoS One. 2009 Jun 16;4(6):e5838.PMID: 19529777 [PubMed - indexed for MEDLINE]Related articlesFree article

MAGMA: analysis of two-channel microarrays made easy.

Rehrauer H, Zoller S, Schlapbach R.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W86-90. Epub 2007 May 21.PMID: 17517778 [PubMed - indexed for MEDLINE]Related articlesFree article