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Evaluation of high-throughput functional categorization of human disease genes.

Chen JL, Liu Y, Sam LT, Li J, Lussier YA.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S7.PMID: 17493290 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143.PMID: 18325104 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic extraction of gene/protein biological functions from biomedical text.

Koike A, Niwa Y, Takagi T.

Bioinformatics. 2005 Apr 1;21(7):1227-36. Epub 2004 Oct 27.PMID: 15509601 [PubMed - indexed for MEDLINE]Related articlesFree article

Mining phenotypes for gene function prediction.

Groth P, Weiss B, Pohlenz HD, Leser U.

BMC Bioinformatics. 2008 Mar 3;9:136.PMID: 18315868 [PubMed - indexed for MEDLINE]Related articlesFree article

PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing.

Lussier Y, Borlawsky T, Rappaport D, Liu Y, Friedman C.

Pac Symp Biocomput. 2006:64-75.PMID: 17094228 [PubMed - indexed for MEDLINE]Related articlesFree article

GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.

Xu Q, Shi Y, Lu Q, Zhang G, Luo Q, Li Y.

BMC Bioinformatics. 2008;9 Suppl 1:S6.PMID: 18315859 [PubMed - indexed for MEDLINE]Related articlesFree article

Taxonomy-based partitioning of the Gene Ontology.

Kuśnierczyk W.

J Biomed Inform. 2008 Apr;41(2):282-92. Epub 2007 Aug 29.PMID: 17921072 [PubMed - indexed for MEDLINE]Related articles

A relation based measure of semantic similarity for Gene Ontology annotations.

Sheehan B, Quigley A, Gaudin B, Dobson S.

BMC Bioinformatics. 2008 Nov 4;9:468.PMID: 18983678 [PubMed - indexed for MEDLINE]Related articlesFree article

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6.PMID: 14681408 [PubMed - indexed for MEDLINE]Related articlesFree article

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease.

Masseroli M, Kilicoglu H, Lang FM, Rindflesch TC.

BMC Bioinformatics. 2006 Jun 8;7:291.PMID: 16762065 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene Ontology term overlap as a measure of gene functional similarity.

Mistry M, Pavlidis P.

BMC Bioinformatics. 2008 Aug 4;9:327.PMID: 18680592 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.PMID: 17620146 [PubMed - indexed for MEDLINE]Related articlesFree article

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.PMID: 15960829 [PubMed - indexed for MEDLINE]Related articlesFree article

Get ready to GO! A biologist's guide to the Gene Ontology.

Lomax J.

Brief Bioinform. 2005 Sep;6(3):298-304. Review.PMID: 16212777 [PubMed - indexed for MEDLINE]Related articlesFree article

A semantic analysis of the annotations of the human genome.

Khatri P, Done B, Rao A, Done A, Draghici S.

Bioinformatics. 2005 Aug 15;21(16):3416-21. Epub 2005 Jun 14.PMID: 15955782 [PubMed - indexed for MEDLINE]Related articlesFree article

Management and analysis of genomic functional and phenotypic controlled annotations to support biomedical investigation and practice.

Masseroli M.

IEEE Trans Inf Technol Biomed. 2007 Jul;11(4):376-85.PMID: 17674620 [PubMed - indexed for MEDLINE]Related articles

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3.PMID: 18426548 [PubMed - indexed for MEDLINE]Related articlesFree article

In silico gene function prediction using ontology-based pattern identification.

Zhou Y, Young JA, Santrosyan A, Chen K, Yan SF, Winzeler EA.

Bioinformatics. 2005 Apr 1;21(7):1237-45. Epub 2004 Nov 5.PMID: 15531612 [PubMed - indexed for MEDLINE]Related articlesFree article

PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results.

He J, Dai X, Zhao X.

BMC Bioinformatics. 2007 Feb 9;8:53.PMID: 17291345 [PubMed - indexed for MEDLINE]Related articlesFree article

A new measure for functional similarity of gene products based on Gene Ontology.

Schlicker A, Domingues FS, Rahnenführer J, Lengauer T.

BMC Bioinformatics. 2006 Jun 15;7:302.PMID: 16776819 [PubMed - indexed for MEDLINE]Related articlesFree article