PubMed

LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.

Smith AK, Cheung KH, Yip KY, Schultz M, Gerstein MK.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S5. Review.PMID: 17493288 [PubMed - indexed for MEDLINE]Related articlesFree article

AlzPharm: integration of neurodegeneration data using RDF.

Lam HY, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung KH.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S4.PMID: 17493287 [PubMed - indexed for MEDLINE]Related articlesFree article

Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics.

Smith A, Cheung K, Krauthammer M, Schultz M, Gerstein M.

Bioinformatics. 2007 Nov 15;23(22):3073-9. Epub 2007 Oct 7.PMID: 17923450 [PubMed - indexed for MEDLINE]Related articlesFree article

Towards Semantic e-Science for Traditional Chinese Medicine.

Chen H, Mao Y, Zheng X, Cui M, Feng Y, Deng S, Yin A, Zhou C, Tang J, Jiang X, Wu Z.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S6. Review.PMID: 17493289 [PubMed - indexed for MEDLINE]Related articlesFree article

YeastHub: a semantic web use case for integrating data in the life sciences domain.

Cheung KH, Yip KY, Smith A, Deknikker R, Masiar A, Gerstein M.

Bioinformatics. 2005 Jun;21 Suppl 1:i85-96.PMID: 15961502 [PubMed - indexed for MEDLINE]Related articlesFree article

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2007 Oct 18;8:401.PMID: 17945017 [PubMed - indexed for MEDLINE]Related articlesFree article

AbMiner: a bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies.

Major SM, Nishizuka S, Morita D, Rowland R, Sunshine M, Shankavaram U, Washburn F, Asin D, Kouros-Mehr H, Kane D, Weinstein JN.

BMC Bioinformatics. 2006 Apr 6;7:192.PMID: 16600027 [PubMed - indexed for MEDLINE]Related articlesFree article

GPSDB: a new database for synonyms expansion of gene and protein names.

Pillet V, Zehnder M, Seewald AK, Veuthey AL, Petrak J.

Bioinformatics. 2005 Apr 15;21(8):1743-4. Epub 2004 Dec 21.PMID: 15613390 [PubMed - indexed for MEDLINE]Related articlesFree article

Columba: an integrated database of proteins, structures, and annotations.

Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

BMC Bioinformatics. 2005 Mar 31;6:81.PMID: 15801979 [PubMed - indexed for MEDLINE]Related articlesFree article

Advancing translational research with the Semantic Web.

Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, Kinoshita J, Luciano J, Marshall MS, Ogbuji C, Rees J, Stephens S, Wong GT, Wu E, Zaccagnini D, Hongsermeier T, Neumann E, Herman I, Cheung KH.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S2. Review.PMID: 17493285 [PubMed - indexed for MEDLINE]Related articlesFree article

PTGL--a web-based database application for protein topologies.

May P, Barthel S, Koch I.

Bioinformatics. 2004 Nov 22;20(17):3277-9. Epub 2004 Jun 24.PMID: 15217820 [PubMed - indexed for MEDLINE]Related articlesFree article

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.PMID: 16603075 [PubMed - indexed for MEDLINE]Related articlesFree article

SEMEDA: ontology based semantic integration of biological databases.

Köhler J, Philippi S, Lange M.

Bioinformatics. 2003 Dec 12;19(18):2420-7.PMID: 14668226 [PubMed - indexed for MEDLINE]Related articlesFree article

yOWL: an ontology-driven knowledge base for yeast biologists.

Villanueva-Rosales N, Dumontier M.

J Biomed Inform. 2008 Oct;41(5):779-89. Epub 2008 May 11.PMID: 18562252 [PubMed - indexed for MEDLINE]Related articles

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

Graph visualization techniques for web clustering engines.

Di Giacomo E, Didimo W, Grilli L, Liotta G.

IEEE Trans Vis Comput Graph. 2007 Mar-Apr;13(2):294-304.PMID: 17218746 [PubMed - indexed for MEDLINE]Related articles

UniProt archive.

Leinonen R, Diez FG, Binns D, Fleischmann W, Lopez R, Apweiler R.

Bioinformatics. 2004 Nov 22;20(17):3236-7. Epub 2004 Mar 25.PMID: 15044231 [PubMed - indexed for MEDLINE]Related articlesFree article

SPINE 2: a system for collaborative structural proteomics within a federated database framework.

Goh CS, Lan N, Echols N, Douglas SM, Milburn D, Bertone P, Xiao R, Ma LC, Zheng D, Wunderlich Z, Acton T, Montelione GT, Gerstein M.

Nucleic Acids Res. 2003 Jun 1;31(11):2833-8.PMID: 12771210 [PubMed - indexed for MEDLINE]Related articlesFree article

A Taxonomic Search Engine: federating taxonomic databases using web services.

Page RD.

BMC Bioinformatics. 2005 Mar 9;6:48.PMID: 15757517 [PubMed - indexed for MEDLINE]Related articlesFree article

Scaling the walls of discovery: using semantic metadata for integrative problem solving.

Manning M, Aggarwal A, Gao K, Tucker-Kellogg G.

Brief Bioinform. 2009 Mar;10(2):164-76.PMID: 19304872 [PubMed - indexed for MEDLINE]Related articles