Warning: The NCBI web site requires JavaScript to function. more...
cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers.
Brody T, Rasband W, Baler K, Kuzin A, Kundu M, Odenwald WF.
Genome Biol. 2007;8(5):R75.
Related citations
Sequence conservation and combinatorial complexity of Drosophila neural precursor cell enhancers.
BMC Genomics. 2008 Aug 1;9:371.
Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.
Yavatkar AS, Lin Y, Ross J, Fann Y, Brody T, Odenwald WF.
BMC Genomics. 2008 Feb 28;9:106.
Use of a Drosophila genome-wide conserved sequence database to identify functionally related cis-regulatory enhancers.
Brody T, Yavatkar AS, Kuzin A, Kundu M, Tyson LJ, Ross J, Lin TY, Lee CH, Awasaki T, Lee T, Odenwald WF.
Dev Dyn. 2012 Jan;241(1):169-89. doi: 10.1002/dvdy.22728. Epub 2011 Aug 30.
A systematic approach to identify functional motifs within vertebrate developmental enhancers.
Li Q, Ritter D, Yang N, Dong Z, Li H, Chuang JH, Guo S.
Dev Biol. 2010 Jan 15;337(2):484-95. Epub 2009 Oct 20.
An evaluation of information content as a metric for the inference of putative conserved noncoding regions in DNA sequences using a genetic algorithms approach.
Congdon CB, Aman JC, Nava GM, Gaskins HR, Mattingly CJ.
IEEE/ACM Trans Comput Biol Bioinform. 2008 Jan-Mar;5(1):1-14.
The words of the regulatory code are arranged in a variable manner in highly conserved enhancers.
Rastegar S, Hess I, Dickmeis T, Nicod JC, Ertzer R, Hadzhiev Y, Thies WG, Scherer G, Strähle U.
Dev Biol. 2008 Jun 15;318(2):366-77. Epub 2008 Apr 4.
Close sequence comparisons are sufficient to identify human cis-regulatory elements.
Prabhakar S, Poulin F, Shoukry M, Afzal V, Rubin EM, Couronne O, Pennacchio LA.
Genome Res. 2006 Jul;16(7):855-63. Epub 2006 Jun 12.
Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene.
Santangelo AM, de Souza FS, Franchini LF, Bumaschny VF, Low MJ, Rubinstein M.
PLoS Genet. 2007 Oct;3(10):1813-26.
EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA.
Odenwald WF, Rasband W, Kuzin A, Brody T.
Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14700-5. Epub 2005 Oct 3.
Conserved sequence block clustering and flanking inter-cluster flexibility delineate enhancers that regulate nerfin-1 expression during Drosophila CNS development.
Kuzin A, Kundu M, Ekatomatis A, Brody T, Odenwald WF.
Gene Expr Patterns. 2009 Feb;9(2):65-72. Epub 2008 Nov 24.
Comparison of diverged Hoxc8 early enhancer activities reveals modification of regulatory interactions at conserved cis-acting elements.
Shashikant CS, Bolanowsky SA, Anand S, Anderson SM.
J Exp Zool B Mol Dev Evol. 2007 May 15;308(3):242-9.
Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation.
Hare EE, Peterson BK, Iyer VN, Meier R, Eisen MB.
PLoS Genet. 2008 Jun 27;4(6):e1000106.
Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences.
Hughes JR, Cheng JF, Ventress N, Prabhakar S, Clark K, Anguita E, De Gobbi M, de Jong P, Rubin E, Higgs DR.
Proc Natl Acad Sci U S A. 2005 Jul 12;102(28):9830-5. Epub 2005 Jul 5.
Bioinformatic identification of novel putative photoreceptor specific cis-elements.
Danko CG, McIlvain VA, Qin M, Knox BE, Pertsov AM.
BMC Bioinformatics. 2007 Oct 22;8:407.
A novel conserved evx1 enhancer links spinal interneuron morphology and cis-regulation from fish to mammals.
Suster ML, Kania A, Liao M, Asakawa K, Charron F, Kawakami K, Drapeau P.
Dev Biol. 2009 Jan 15;325(2):422-33. Epub 2008 Oct 18.
Functional and bioinformatics analyses reveal conservation of cis-regulatory elements between sciaridae and drosophilidae.
Lecci MS, Malta TM, Flausino VT, Gitaí DL, Ruiz JC, Monesi N.
Genesis. 2008 Jan;46(1):43-51.
Evolution of cis-regulatory sequence and function in Diptera.
Wittkopp PJ.
Heredity (Edinb). 2006 Sep;97(3):139-47. Epub 2006 Jul 19. Review.
Primate-specific evolution of an LDLR enhancer.
Wang QF, Prabhakar S, Wang Q, Moses AM, Chanan S, Brown M, Eisen MB, Cheng JF, Rubin EM, Boffelli D.
Genome Biol. 2006;7(8):R68. Epub 2006 Aug 2.
Screening reveals conserved and nonconserved transcriptional regulatory elements including an E3/E4 allele-dependent APOE coding region enhancer.
Chen HP, Lin A, Bloom JS, Khan AH, Park CC, Smith DJ.
Genomics. 2008 Nov;92(5):292-300. Epub 2008 Sep 3.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on