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Ab initio modeling of small proteins by iterative TASSER simulations.

Wu S, Skolnick J, Zhang Y.

BMC Biol. 2007 May 8;5:17.PMID: 17488521 [PubMed - indexed for MEDLINE]Related articlesFree article

I-TASSER server for protein 3D structure prediction.

Zhang Y.

BMC Bioinformatics. 2008 Jan 23;9:40.PMID: 18215316 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of TASSER-based CASP7 protein structure prediction results.

Zhou H, Pandit SB, Lee SY, Borreguero J, Chen H, Wroblewska L, Skolnick J.

Proteins. 2007;69 Suppl 8:90-7.PMID: 17705276 [PubMed - indexed for MEDLINE]Related articles

Template-based modeling and free modeling by I-TASSER in CASP7.

Zhang Y.

Proteins. 2007;69 Suppl 8:108-17.PMID: 17894355 [PubMed - indexed for MEDLINE]Related articles

TASSER: an automated method for the prediction of protein tertiary structures in CASP6.

Zhang Y, Arakaki AK, Skolnick J.

Proteins. 2005;61 Suppl 7:91-8.PMID: 16187349 [PubMed - indexed for MEDLINE]Related articles

Benchmarking of TASSER in the ab initio limit.

Borreguero JM, Skolnick J.

Proteins. 2007 Jul 1;68(1):48-56.PMID: 17444524 [PubMed - indexed for MEDLINE]Related articles

TASSER-Lite: an automated tool for protein comparative modeling.

Pandit SB, Zhang Y, Skolnick J.

Biophys J. 2006 Dec 1;91(11):4180-90. Epub 2006 Sep 8.PMID: 16963505 [PubMed - indexed for MEDLINE]Related articlesFree article

Structure modeling of all identified G protein-coupled receptors in the human genome.

Zhang Y, Devries ME, Skolnick J.

PLoS Comput Biol. 2006 Feb;2(2):e13. Epub 2006 Feb 17. Erratum in: PLoS Comput Biol. 2006 Mar;2(3):e29. PMID: 16485037 [PubMed - indexed for MEDLINE]Related articlesFree article

Ab initio protein structure prediction using chunk-TASSER.

Zhou H, Skolnick J.

Biophys J. 2007 Sep 1;93(5):1510-8. Epub 2007 May 11.PMID: 17496016 [PubMed - indexed for MEDLINE]Related articlesFree article

Tertiary structure predictions on a comprehensive benchmark of medium to large size proteins.

Zhang Y, Skolnick J.

Biophys J. 2004 Oct;87(4):2647-55.PMID: 15454459 [PubMed - indexed for MEDLINE]Related articlesFree article

Ab initio prediction of the three-dimensional structure of a de novo designed protein: a double-blind case study.

Klepeis JL, Wei Y, Hecht MH, Floudas CA.

Proteins. 2005 Feb 15;58(3):560-70.PMID: 15609306 [PubMed - indexed for MEDLINE]Related articles

TASSER-based refinement of NMR structures.

Lee SY, Zhang Y, Skolnick J.

Proteins. 2006 May 15;63(3):451-6.PMID: 16456861 [PubMed - indexed for MEDLINE]Related articles

The protein structure prediction problem could be solved using the current PDB library.

Zhang Y, Skolnick J.

Proc Natl Acad Sci U S A. 2005 Jan 25;102(4):1029-34. Epub 2005 Jan 14.PMID: 15653774 [PubMed - indexed for MEDLINE]Related articlesFree article

Development and benchmarking of TASSER(iter) for the iterative improvement of protein structure predictions.

Lee SY, Skolnick J.

Proteins. 2007 Jul 1;68(1):39-47.PMID: 17469193 [PubMed - indexed for MEDLINE]Related articles

Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.

Walsh I, Baù D, Martin AJ, Mooney C, Vullo A, Pollastri G.

BMC Struct Biol. 2009 Jan 30;9:5.PMID: 19183478 [PubMed - indexed for MEDLINE]Related articlesFree article

LOMETS: a local meta-threading-server for protein structure prediction.

Wu S, Zhang Y.

Nucleic Acids Res. 2007;35(10):3375-82. Epub 2007 May 3.PMID: 17478507 [PubMed - indexed for MEDLINE]Related articlesFree article

TOUCHSTONE II: a new approach to ab initio protein structure prediction.

Zhang Y, Kolinski A, Skolnick J.

Biophys J. 2003 Aug;85(2):1145-64.PMID: 12885659 [PubMed - indexed for MEDLINE]Related articlesFree article

Free modeling with Rosetta in CASP6.

Bradley P, Malmström L, Qian B, Schonbrun J, Chivian D, Kim DE, Meiler J, Misura KM, Baker D.

Proteins. 2005;61 Suppl 7:128-34.PMID: 16187354 [PubMed - indexed for MEDLINE]Related articles

Application of statistical potentials to protein structure refinement from low resolution ab initio models.

Lu H, Skolnick J.

Biopolymers. 2003 Dec;70(4):575-84.PMID: 14648767 [PubMed - indexed for MEDLINE]Related articles

Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.

Koliński A, Bujnicki JM.

Proteins. 2005;61 Suppl 7:84-90.PMID: 16187348 [PubMed - indexed for MEDLINE]Related articles