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    Results: 1 to 20 of 277

    1.

    Toward the automated generation of genome-scale metabolic networks in the SEED.

    DeJongh M, Formsma K, Boillot P, Gould J, Rycenga M, Best A.

    BMC Bioinformatics. 2007 Apr 26;8:139.PMID: 17462086 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Accelerating the reconstruction of genome-scale metabolic networks.

    Notebaart RA, van Enckevort FH, Francke C, Siezen RJ, Teusink B.

    BMC Bioinformatics. 2006 Jun 13;7:296.PMID: 16772023 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.

    Green ML, Karp PD.

    BMC Bioinformatics. 2004 Jun 9;5:76.PMID: 15189570 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation.

    Becker SA, Palsson BØ.

    BMC Microbiol. 2005 Mar 7;5:8.PMID: 15752426 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Systematic assignment of thermodynamic constraints in metabolic network models.

    Kümmel A, Panke S, Heinemann M.

    BMC Bioinformatics. 2006 Nov 23;7:512.PMID: 17123434 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Analysis on relationship between extreme pathways and correlated reaction sets.

    Xi Y, Chen YP, Cao M, Wang W, Wang F.

    BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S58.PMID: 19208161 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    LeishCyc: a biochemical pathways database for Leishmania major.

    Doyle MA, MacRae JI, De Souza DP, Saunders EC, McConville MJ, Likić VA.

    BMC Syst Biol. 2009 Jun 5;3:57.PMID: 19497128 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae.

    Vongsangnak W, Olsen P, Hansen K, Krogsgaard S, Nielsen J.

    BMC Genomics. 2008 May 23;9:245.PMID: 18500999 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence.

    Sun J, Zeng AP.

    BMC Bioinformatics. 2004 Aug 16;5:112.PMID: 15312235 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Exploiting the pathway structure of metabolism to reveal high-order epistasis.

    Imielinski M, Belta C.

    BMC Syst Biol. 2008 Apr 30;2:40.PMID: 18447928 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

    Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ.

    Mol Syst Biol. 2007;3:121. Epub 2007 Jun 26.PMID: 17593909 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Metabolic network visualization eliminating node redundance and preserving metabolic pathways.

    Bourqui R, Cottret L, Lacroix V, Auber D, Mary P, Sagot MF, Jourdan F.

    BMC Syst Biol. 2007 Jul 3;1:29.PMID: 17608928 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Optimization based automated curation of metabolic reconstructions.

    Satish Kumar V, Dasika MS, Maranas CD.

    BMC Bioinformatics. 2007 Jun 20;8:212.PMID: 17584497 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis.

    Goelzer A, Bekkal Brikci F, Martin-Verstraete I, Noirot P, Bessières P, Aymerich S, Fromion V.

    BMC Syst Biol. 2008 Feb 26;2:20.PMID: 18302748 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Automated system for gene annotation and metabolic pathway reconstruction using general sequence databases.

    Alves JM, Buck GA.

    Chem Biodivers. 2007 Nov;4(11):2593-602.PMID: 18027373 [PubMed - indexed for MEDLINE]Related articles

    16.

    Network Analysis Tools: from biological networks to clusters and pathways.

    Brohée S, Faust K, Lima-Mendez G, Vanderstocken G, van Helden J.

    Nat Protoc. 2008;3(10):1616-29.PMID: 18802442 [PubMed - indexed for MEDLINE]Related articles

    17.

    Modeling Neisseria meningitidis metabolism: from genome to metabolic fluxes.

    Baart GJ, Zomer B, de Haan A, van der Pol LA, Beuvery EC, Tramper J, Martens DE.

    Genome Biol. 2007;8(7):R136.PMID: 17617894 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Genome-scale analysis of Mannheimia succiniciproducens metabolism.

    Kim TY, Kim HU, Park JM, Song H, Kim JS, Lee SY.

    Biotechnol Bioeng. 2007 Jul 1;97(4):657-71.PMID: 17405177 [PubMed - indexed for MEDLINE]Related articles

    19.

    RMBNToolbox: random models for biochemical networks.

    Aho T, Smolander OP, Niemi J, Yli-Harja O.

    BMC Syst Biol. 2007 May 24;1:22.PMID: 17524136 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Analysis of Aspergillus nidulans metabolism at the genome-scale.

    David H, Ozçelik IS, Hofmann G, Nielsen J.

    BMC Genomics. 2008 Apr 11;9:163.PMID: 18405346 [PubMed - indexed for MEDLINE]Related articlesFree article

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