PubMed

Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome.

D'Agostino N, Traini A, Frusciante L, Chiusano ML.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S9.PMID: 17430576 [PubMed - indexed for MEDLINE]Related articlesFree article

[Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes]

Zhang DL, Ji L, Li YD.

Yi Chuan Xue Bao. 2004 May;31(5):431-43. Chinese. PMID: 15478601 [PubMed - indexed for MEDLINE]Related articles

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.PMID: 16305752 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Brendel V, Xing L, Zhu W.

Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5.PMID: 14764557 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome.

Christoffels A, Bartfai R, Srinivasan H, Komen H, Orban L.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S2.PMID: 17254304 [PubMed - indexed for MEDLINE]Related articlesFree article

GrailEXP and Genome Analysis Pipeline for genome annotation.

Uberbacher EC, Hyatt D, Shah M.

Curr Protoc Bioinformatics. 2004 Feb;Chapter 4:Unit4.9.PMID: 18428726 [PubMed - indexed for MEDLINE]Related articles

EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data.

Picardi E, Mignone F, Pesole G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S10.PMID: 19534735 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome wide identification and classification of alternative splicing based on EST data.

Gupta S, Zink D, Korn B, Vingron M, Haas SA.

Bioinformatics. 2004 Nov 1;20(16):2579-85. Epub 2004 Apr 29.PMID: 15117759 [PubMed - indexed for MEDLINE]Related articlesFree article

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

Plant Gene and Alternatively Spliced Variant Annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species.

Chen FC, Wang SS, Chaw SM, Huang YT, Chuang TJ.

Plant Physiol. 2007 Mar;143(3):1086-95. Epub 2007 Jan 12.PMID: 17220363 [PubMed - indexed for MEDLINE]Related articlesFree article

A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus.

Marques MC, Alonso-Cantabrana H, Forment J, Arribas R, Alamar S, Conejero V, Perez-Amador MA.

BMC Genomics. 2009 Sep 11;10:428.PMID: 19747386 [PubMed - indexed for MEDLINE]Related articlesFree article

PAVE: program for assembling and viewing ESTs.

Soderlund C, Johnson E, Bomhoff M, Descour A.

BMC Genomics. 2009 Aug 26;10:400.PMID: 19709403 [PubMed - indexed for MEDLINE]Related articlesFree article

cDNA sequences reveal considerable gene prediction inaccuracy in the Plasmodium falciparum genome.

Lu F, Jiang H, Ding J, Mu J, Valenzuela JG, Ribeiro JM, Su XZ.

BMC Genomics. 2007 Jul 27;8:255.PMID: 17662120 [PubMed - indexed for MEDLINE]Related articlesFree article

A Plasmodium falciparum FcB1-schizont-EST collection providing clues to schizont specific gene structure and polymorphism.

Florent I, Porcel BM, Guillaume E, Da Silva C, Artiguenave F, Maréchal E, Bréhélin L, Gascuel O, Charneau S, Wincker P, Grellier P.

BMC Genomics. 2009 May 19;10:235.PMID: 19454033 [PubMed - indexed for MEDLINE]Related articlesFree article

Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters.

Pavy N, Paule C, Parsons L, Crow JA, Morency MJ, Cooke J, Johnson JE, Noumen E, Guillet-Claude C, Butterfield Y, Barber S, Yang G, Liu J, Stott J, Kirkpatrick R, Siddiqui A, Holt R, Marra M, Seguin A, Retzel E, Bousquet J, MacKay J.

BMC Genomics. 2005 Oct 19;6:144.PMID: 16236172 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome annotation assessment in Drosophila melanogaster.

Reese MG, Hartzell G, Harris NL, Ohler U, Abril JF, Lewis SE.

Genome Res. 2000 Apr;10(4):483-501.PMID: 10779488 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.

Cheung F, Haas BJ, Goldberg SM, May GD, Xiao Y, Town CD.

BMC Genomics. 2006 Oct 24;7:272.PMID: 17062153 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequence diversity in three tomato species: SNPs, markers, and molecular evolution.

Jiménez-Gómez JM, Maloof JN.

BMC Plant Biol. 2009 Jul 3;9:85.PMID: 19575805 [PubMed - indexed for MEDLINE]Related articlesFree article

Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource.

Adzhubei AA, Vlasova AV, Hagen-Larsen H, Ruden TA, Laerdahl JK, Høyheim B.

BMC Genomics. 2007 Jul 2;8:209.PMID: 17605782 [PubMed - indexed for MEDLINE]Related articlesFree article

Fast and sensitive algorithm for aligning ESTs to human genome.

Ogasawara J, Morishita S.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:43-53.PMID: 15838122 [PubMed - indexed for MEDLINE]Related articles