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    Results: 1 to 20 of 224

    1.

    Evolution of protein complexes by duplication of homomeric interactions.

    Pereira-Leal JB, Levy ED, Kamp C, Teichmann SA.

    Genome Biol. 2007;8(4):R51.

    PMID:
    17411433
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    The origins and evolution of functional modules: lessons from protein complexes.

    Pereira-Leal JB, Levy ED, Teichmann SA.

    Philos Trans R Soc Lond B Biol Sci. 2006 Mar 29;361(1467):507-17. Review.

    PMID:
    16524839
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Age-dependent evolution of the yeast protein interaction network suggests a limited role of gene duplication and divergence.

    Kim WK, Marcotte EM.

    PLoS Comput Biol. 2008 Nov;4(11):e1000232. Epub 2008 Nov 28.

    PMID:
    19043579
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Proteome survey reveals modularity of the yeast cell machinery.

    Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dümpelfeld B, Edelmann A, Heurtier MA, Hoffman V, Hoefert C, Klein K, Hudak M, Michon AM, Schelder M, Schirle M, Remor M, Rudi T, Hooper S, Bauer A, Bouwmeester T, Casari G, Drewes G, Neubauer G, Rick JM, Kuster B, Bork P, Russell RB, Superti-Furga G.

    Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.

    PMID:
    16429126
    [PubMed - indexed for MEDLINE]
    5.

    Subunit architecture of multimeric complexes isolated directly from cells.

    Hernández H, Dziembowski A, Taverner T, Séraphin B, Robinson CV.

    EMBO Rep. 2006 Jun;7(6):605-10. Epub 2006 May 19.

    PMID:
    16729021
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Novel specificities emerge by stepwise duplication of functional modules.

    Pereira-Leal JB, Teichmann SA.

    Genome Res. 2005 Apr;15(4):552-9.

    PMID:
    15805495
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Physical and functional modularity of the protein network in yeast.

    Wilhelm T, Nasheuer HP, Huang S.

    Mol Cell Proteomics. 2003 May;2(5):292-8.

    PMID:
    16247890
    [PubMed - indexed for MEDLINE]
    Free Article
    8.

    Modularity and evolutionary constraint on proteins.

    Fraser HB.

    Nat Genet. 2005 Apr;37(4):351-2. Epub 2005 Mar 6.

    PMID:
    15750592
    [PubMed - indexed for MEDLINE]
    9.

    Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map.

    Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, Andrews B, Boone C, Berger SL, Hieter P, Zhang Z, Brown GW, Ingles CJ, Emili A, Allis CD, Toczyski DP, Weissman JS, Greenblatt JF, Krogan NJ.

    Nature. 2007 Apr 12;446(7137):806-10. Epub 2007 Feb 21.

    PMID:
    17314980
    [PubMed - indexed for MEDLINE]
    10.

    Preferential duplication in the sparse part of yeast protein interaction network.

    Li L, Huang Y, Xia X, Sun Z.

    Mol Biol Evol. 2006 Dec;23(12):2467-73. Epub 2006 Sep 15.

    PMID:
    16980576
    [PubMed - indexed for MEDLINE]
    Free Article
    11.

    The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication.

    Presser A, Elowitz MB, Kellis M, Kishony R.

    Proc Natl Acad Sci U S A. 2008 Jan 22;105(3):950-4. Epub 2008 Jan 16.

    PMID:
    18199840
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

    Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF.

    Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.

    PMID:
    16554755
    [PubMed - indexed for MEDLINE]
    13.

    Functional evolution of the yeast protein interaction network.

    Kunin V, Pereira-Leal JB, Ouzounis CA.

    Mol Biol Evol. 2004 Jul;21(7):1171-6. Epub 2004 Apr 7.

    PMID:
    15071090
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    A unified representation of multiprotein complex data for modeling interaction networks.

    Ding C, He X, Meraz RF, Holbrook SR.

    Proteins. 2004 Oct 1;57(1):99-108.

    PMID:
    15326596
    [PubMed - indexed for MEDLINE]
    15.

    Modeling protein network evolution under genome duplication and domain shuffling.

    Evlampiev K, Isambert H.

    BMC Syst Biol. 2007 Nov 13;1:49.

    PMID:
    17999763
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    In search of the biological significance of modular structures in protein networks.

    Wang Z, Zhang J.

    PLoS Comput Biol. 2007 Jun;3(6):e107. Epub 2007 Apr 30. Erratum in: PLoS Comput Biol. 2007 Jul;3(7):e146.

    PMID:
    17542644
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Assembly reflects evolution of protein complexes.

    Levy ED, Boeri Erba E, Robinson CV, Teichmann SA.

    Nature. 2008 Jun 26;453(7199):1262-5. Epub 2008 Jun 18.

    PMID:
    18563089
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    A scale of functional divergence for yeast duplicated genes revealed from analysis of the protein-protein interaction network.

    Baudot A, Jacq B, Brun C.

    Genome Biol. 2004;5(10):R76. Epub 2004 Sep 15.

    PMID:
    15461795
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    A complex-centric view of protein network evolution.

    Yosef N, Kupiec M, Ruppin E, Sharan R.

    Nucleic Acids Res. 2009 Jul;37(12):e88. Epub 2009 May 22.

    PMID:
    19465379
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Modeling synthetic lethality.

    Le Meur N, Gentleman R.

    Genome Biol. 2008;9(9):R135. Epub 2008 Sep 12.

    PMID:
    18789146
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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