PubMed

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags.

Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, Li H, Li R, Liu B, Hu S, Dong W, Li W, Yu J, Wang J, Staefeldt HH, Wernersson R, Madsen LB, Thomsen B, Hornshøj H, Bujie Z, Wang X, Wang X, Bolund L, Brunak S, Yang H, Bendixen C, Fredholm M.

Genome Biol. 2007;8(4):R45.PMID: 17407547 [PubMed - indexed for MEDLINE]Related articlesFree article

Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don.

Li X, Wu HX, Dillon SK, Southerton SG.

BMC Genomics. 2009 Jan 21;10:41.PMID: 19159482 [PubMed - indexed for MEDLINE]Related articlesFree article

Generation and analysis of large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue.

Kim TH, Kim NS, Lim D, Lee KT, Oh JH, Park HS, Jang GW, Kim HY, Jeon M, Choi BH, Lee HY, Chung HY, Kim H.

BMC Genomics. 2006 Feb 27;7:36.PMID: 16504160 [PubMed - indexed for MEDLINE]Related articlesFree article

Detection of RNA structures in porcine EST data and related mammals.

Seemann SE, Gilchrist MJ, Hofacker IL, Stadler PF, Gorodkin J.

BMC Genomics. 2007 Sep 10;8:316.PMID: 17845718 [PubMed - indexed for MEDLINE]Related articlesFree article

Peanut gene expression profiling in developing seeds at different reproduction stages during Aspergillus parasiticus infection.

Guo B, Chen X, Dang P, Scully BT, Liang X, Holbrook CC, Yu J, Culbreath AK.

BMC Dev Biol. 2008 Feb 4;8:12.PMID: 18248674 [PubMed - indexed for MEDLINE]Related articlesFree article

EST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues.

Scheibye-Alsing K, Cirera S, Gilchrist MJ, Fredholm M, Gorodkin J.

BMC Genomics. 2007 Oct 11;8:367.PMID: 17931413 [PubMed - indexed for MEDLINE]Related articlesFree article

EST-based analysis of gene expression in the porcine brain.

Zhang B, Jin W, Zeng Y, Su Z, Hu S, Yu J.

Genomics Proteomics Bioinformatics. 2004 Nov;2(4):237-44.PMID: 15901252 [PubMed - indexed for MEDLINE]Related articles

A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus.

Marques MC, Alonso-Cantabrana H, Forment J, Arribas R, Alamar S, Conejero V, Perez-Amador MA.

BMC Genomics. 2009 Sep 11;10:428.PMID: 19747386 [PubMed - indexed for MEDLINE]Related articlesFree article

Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly.

Fahrenkrug SC, Smith TP, Freking BA, Cho J, White J, Vallet J, Wise T, Rohrer G, Pertea G, Sultana R, Quackenbush J, Keele JW.

Mamm Genome. 2002 Aug;13(8):475-8.PMID: 12226715 [PubMed - indexed for MEDLINE]Related articles

A pig multi-tissue normalised cDNA library: large-scale sequencing, cluster analysis and 9K micro-array resource generation.

Bonnet A, Iannuccelli E, Hugot K, Benne F, Bonaldo MF, Soares MB, Hatey F, Tosser-Klopp G.

BMC Genomics. 2008 Jan 14;9:17.PMID: 18194535 [PubMed - indexed for MEDLINE]Related articlesFree article

Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.).

Chao S, Lazo GR, You F, Crossman CC, Hummel DD, Lui N, Laudencia-Chingcuanco D, Anderson JA, Close TJ, Dubcovsky J, Gill BS, Gill KS, Gustafson JP, Kianian SF, Lapitan NL, Nguyen HT, Sorrells ME, McGuire PE, Qualset CO, Anderson OD.

Genome. 2006 May;49(5):531-44.PMID: 16767178 [PubMed - indexed for MEDLINE]Related articles

Gene identification and expression analysis of 86,136 Expressed Sequence Tags (EST) from the rice genome.

Zhou Y, Tang J, Walker MG, Zhang X, Wang J, Hu S, Xu H, Deng Y, Dong J, Ye L, Lin L, Li J, Wang X, Xu H, Pan Y, Lin W, Tian W, Liu J, Wei L, Liu S, Yang H, Yu J, Wang J.

Genomics Proteomics Bioinformatics. 2003 Feb;1(1):26-42.PMID: 15626331 [PubMed - indexed for MEDLINE]Related articles

Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index.

Sonstegard TS, Capuco AV, White J, Van Tassell CP, Connor EE, Cho J, Sultana R, Shade L, Wray JE, Wells KD, Quackenbush J.

Mamm Genome. 2002 Jul;13(7):373-9.PMID: 12140684 [PubMed - indexed for MEDLINE]Related articles

A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).

Ralph SG, Chun HJ, Kolosova N, Cooper D, Oddy C, Ritland CE, Kirkpatrick R, Moore R, Barber S, Holt RA, Jones SJ, Marra MA, Douglas CJ, Ritland K, Bohlmann J.

BMC Genomics. 2008 Oct 14;9:484.PMID: 18854048 [PubMed - indexed for MEDLINE]Related articlesFree article

Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index.

Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R, Burnside J, Aggrey SE, Simon J, Cogburn LA.

Physiol Genomics. 2006 May 16;25(3):514-24. Epub 2006 Mar 22.PMID: 16554550 [PubMed - indexed for MEDLINE]Related articlesFree article

Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource.

Adzhubei AA, Vlasova AV, Hagen-Larsen H, Ruden TA, Laerdahl JK, Høyheim B.

BMC Genomics. 2007 Jul 2;8:209.PMID: 17605782 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis and functional annotation of expressed sequence tags (ESTs) from multiple tissues of oil palm (Elaeis guineensis Jacq.).

Ho CL, Kwan YY, Choi MC, Tee SS, Ng WH, Lim KA, Lee YP, Ooi SE, Lee WW, Tee JM, Tan SH, Kulaveerasingam H, Alwee SS, Abdullah MO.

BMC Genomics. 2007 Oct 22;8:381.PMID: 17953740 [PubMed - indexed for MEDLINE]Related articlesFree article

Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters.

Pavy N, Paule C, Parsons L, Crow JA, Morency MJ, Cooke J, Johnson JE, Noumen E, Guillet-Claude C, Butterfield Y, Barber S, Yang G, Liu J, Stott J, Kirkpatrick R, Siddiqui A, Holt R, Marra M, Seguin A, Retzel E, Bousquet J, MacKay J.

BMC Genomics. 2005 Oct 19;6:144.PMID: 16236172 [PubMed - indexed for MEDLINE]Related articlesFree article

Annotation and analysis of 10,000 expressed sequence tags from developing mouse eye and adult retina.

Yu J, Farjo R, MacNee SP, Baehr W, Stambolian DE, Swaroop A.

Genome Biol. 2003;4(10):R65. Epub 2003 Sep 22.PMID: 14519200 [PubMed - indexed for MEDLINE]Related articlesFree article

Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions.

Argout X, Fouet O, Wincker P, Gramacho K, Legavre T, Sabau X, Risterucci AM, Da Silva C, Cascardo J, Allegre M, Kuhn D, Verica J, Courtois B, Loor G, Babin R, Sounigo O, Ducamp M, Guiltinan MJ, Ruiz M, Alemanno L, Machado R, Phillips W, Schnell R, Gilmour M, Rosenquist E, Butler D, Maximova S, Lanaud C.

BMC Genomics. 2008 Oct 30;9:512.PMID: 18973681 [PubMed - indexed for MEDLINE]Related articlesFree article