PubMed

Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis.

Gao B, Gupta RS.

BMC Genomics. 2007 Mar 29;8:86.PMID: 17394648 [PubMed - indexed for MEDLINE]Related articlesFree article

Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox.

Brochier C, Forterre P, Gribaldo S.

Genome Biol. 2004;5(3):R17. Epub 2004 Feb 26.PMID: 15003120 [PubMed - indexed for MEDLINE]Related articlesFree article

Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs).

Natale DA, Shankavaram UT, Galperin MY, Wolf YI, Aravind L, Koonin EV.

Genome Biol. 2000;1(5):RESEARCH0009. Epub 2000 Nov 6.PMID: 11178258 [PubMed - indexed for MEDLINE]Related articlesFree article

Higher-level classification of the Archaea: evolution of methanogenesis and methanogens.

Bapteste E, Brochier C, Boucher Y.

Archaea. 2005 May;1(5):353-63.PMID: 15876569 [PubMed - indexed for MEDLINE]Related articlesFree article

Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?

Brochier C, Gribaldo S, Zivanovic Y, Confalonieri F, Forterre P.

Genome Biol. 2005;6(5):R42. Epub 2005 Apr 14.PMID: 15892870 [PubMed - indexed for MEDLINE]Related articlesFree article

The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens.

Slesarev AI, Mezhevaya KV, Makarova KS, Polushin NN, Shcherbinina OV, Shakhova VV, Belova GI, Aravind L, Natale DA, Rogozin IB, Tatusov RL, Wolf YI, Stetter KO, Malykh AG, Koonin EV, Kozyavkin SA.

Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4644-9.PMID: 11930014 [PubMed - indexed for MEDLINE]Related articlesFree article

Early evolutionary relationships among known life forms inferred from elongation factor EF-2/EF-G sequences: phylogenetic coherence and structure of the archaeal domain.

Cammarano P, Palm P, Creti R, Ceccarelli E, Sanangelantoni AM, Tiboni O.

J Mol Evol. 1992 May;34(5):396-405.PMID: 1602493 [PubMed - indexed for MEDLINE]Related articles

Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species.

Gupta RS, Lorenzini E.

BMC Evol Biol. 2007 May 8;7:71.PMID: 17488508 [PubMed - indexed for MEDLINE]Related articlesFree article

Archaeal genomics.

Gaasterland T.

Curr Opin Microbiol. 1999 Oct;2(5):542-7. Review.PMID: 10508726 [PubMed - indexed for MEDLINE]Related articles

Biodiversity of methanogenic and other archaea in the permanently frozen Lake Fryxell, Antarctica.

Karr EA, Ng JM, Belchik SM, Sattley WM, Madigan MT, Achenbach LA.

Appl Environ Microbiol. 2006 Feb;72(2):1663-6.PMID: 16461723 [PubMed - indexed for MEDLINE]Related articlesFree article

Methanopyrus kandleri: an archaeal methanogen unrelated to all other known methanogens.

Burggraf S, Stetter KO, Rouviere P, Woese CR.

Syst Appl Microbiol. 1991;14:346-51.PMID: 11540073 [PubMed - indexed for MEDLINE]Related articles

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.

Biol Direct. 2007 Nov 27;2:33.PMID: 18042280 [PubMed - indexed for MEDLINE]Related articlesFree article

Phylogenomics and signature proteins for the alpha proteobacteria and its main groups.

Gupta RS, Mok A.

BMC Microbiol. 2007 Nov 28;7:106.PMID: 18045498 [PubMed - indexed for MEDLINE]Related articlesFree article

The origin and evolution of Archaea: a state of the art.

Gribaldo S, Brochier-Armanet C.

Philos Trans R Soc Lond B Biol Sci. 2006 Jun 29;361(1470):1007-22. Review.PMID: 16754611 [PubMed - indexed for MEDLINE]Related articlesFree article

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions.

Martin-Cuadrado AB, Rodriguez-Valera F, Moreira D, Alba JC, Ivars-Martínez E, Henn MR, Talla E, López-García P.

ISME J. 2008 Aug;2(8):865-86. Epub 2008 May 8.PMID: 18463691 [PubMed - indexed for MEDLINE]Related articles

Novel type of ADP-forming acetyl coenzyme A synthetase in hyperthermophilic archaea: heterologous expression and characterization of isoenzymes from the sulfate reducer Archaeoglobus fulgidus and the methanogen Methanococcus jannaschii.

Musfeldt M, Schönheit P.

J Bacteriol. 2002 Feb;184(3):636-44.PMID: 11790732 [PubMed - indexed for MEDLINE]Related articlesFree article

Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis.

Hendrickson EL, Kaul R, Zhou Y, Bovee D, Chapman P, Chung J, Conway de Macario E, Dodsworth JA, Gillett W, Graham DE, Hackett M, Haydock AK, Kang A, Land ML, Levy R, Lie TJ, Major TA, Moore BC, Porat I, Palmeiri A, Rouse G, Saenphimmachak C, Söll D, Van Dien S, Wang T, Whitman WB, Xia Q, Zhang Y, Larimer FW, Olson MV, Leigh JA.

J Bacteriol. 2004 Oct;186(20):6956-69.PMID: 15466049 [PubMed - indexed for MEDLINE]Related articlesFree article

Archaeal phylogeny based on ribosomal proteins.

Matte-Tailliez O, Brochier C, Forterre P, Philippe H.

Mol Biol Evol. 2002 May;19(5):631-9.PMID: 11961097 [PubMed - indexed for MEDLINE]Related articlesFree article

An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences.

Brochier C, Forterre P, Gribaldo S.

BMC Evol Biol. 2005 Jun 2;5(1):36.PMID: 15932645 [PubMed - indexed for MEDLINE]Related articlesFree article

Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.

Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P.

Nat Rev Microbiol. 2008 Mar;6(3):245-52.PMID: 18274537 [PubMed - indexed for MEDLINE]Related articles