PubMed

HitKeeper, a generic software package for hit list management.

Hau J, Muller M, Pagni M.

Source Code Biol Med. 2007 Mar 28;2:2.PMID: 17391514 [PubMed]Related articlesFree article

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration.

Forment J, Gilabert F, Robles A, Conejero V, Nuez F, Blanca JM.

BMC Bioinformatics. 2008 Jan 7;9:5.PMID: 18179701 [PubMed - indexed for MEDLINE]Related articlesFree article

The BioPrompt-box: an ontology-based clustering tool for searching in biological databases.

Corsi C, Ferragina P, Marangoni R.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S8.PMID: 17430575 [PubMed - indexed for MEDLINE]Related articlesFree article

TaxMan: a taxonomic database manager.

Jones M, Blaxter M.

BMC Bioinformatics. 2006 Dec 18;7:536.PMID: 17176465 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.

BMC Microbiol. 2009 Feb 19;9 Suppl 1:S8. Review.PMID: 19278556 [PubMed - indexed for MEDLINE]Related articlesFree article

Restauro-G: a rapid genome re-annotation system for comparative genomics.

Tamaki S, Arakawa K, Kono N, Tomita M.

Genomics Proteomics Bioinformatics. 2007 Feb;5(1):53-8.PMID: 17572364 [PubMed - indexed for MEDLINE]Related articles

Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi.

Nilsson RH, Kristiansson E, Ryberg M, Larsson KH.

BMC Bioinformatics. 2005 Jul 18;6:178.PMID: 16022740 [PubMed - indexed for MEDLINE]Related articlesFree article

MetaMine--a tool to detect and analyse gene patterns in their environmental context.

Bohnebeck U, Lombardot T, Kottmann R, Glöckner FO.

BMC Bioinformatics. 2008 Oct 28;9:459.PMID: 18957118 [PubMed - indexed for MEDLINE]Related articlesFree article

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

BMC Genomics. 2009 Sep 3;10:411.PMID: 19728865 [PubMed - indexed for MEDLINE]Related articlesFree article

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.

Kohany O, Gentles AJ, Hankus L, Jurka J.

BMC Bioinformatics. 2006 Oct 25;7:474.PMID: 17064419 [PubMed - indexed for MEDLINE]Related articlesFree article

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26.PMID: 18201381 [PubMed - indexed for MEDLINE]Related articlesFree article

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology.

Chalmel F, Primig M.

BMC Bioinformatics. 2008 Feb 6;9:86.PMID: 18254954 [PubMed - indexed for MEDLINE]Related articlesFree article

ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.

Huan T, Sivachenko AY, Harrison SH, Chen JY.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S5.PMID: 18793469 [PubMed - indexed for MEDLINE]Related articlesFree article

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.

Bioinformatics. 2007 Jul 1;23(13):i387-91.PMID: 17646321 [PubMed - indexed for MEDLINE]Related articlesFree article

BioMAJ: a flexible framework for databanks synchronization and processing.

Filangi O, Beausse Y, Assi A, Legrand L, Larré JM, Martin V, Collin O, Caron C, Leroy H, Allouche D.

Bioinformatics. 2008 Aug 15;24(16):1823-5. Epub 2008 Jun 30.PMID: 18593718 [PubMed - indexed for MEDLINE]Related articlesFree article

Version VI of the ESTree db: an improved tool for peach transcriptome analysis.

Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C.

BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S9.PMID: 18387211 [PubMed - indexed for MEDLINE]Related articlesFree article

DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.

Sebestyén E, Nagy T, Suhai S, Barta E.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S6.PMID: 19534755 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic pathway building in biological association networks.

Yuryev A, Mulyukov Z, Kotelnikova E, Maslov S, Egorov S, Nikitin A, Daraselia N, Mazo I.

BMC Bioinformatics. 2006 Mar 24;7:171.PMID: 16563163 [PubMed - indexed for MEDLINE]Related articlesFree article

A Chado case study: an ontology-based modular schema for representing genome-associated biological information.

Mungall CJ, Emmert DB; FlyBase Consortium.

Bioinformatics. 2007 Jul 1;23(13):i337-46.PMID: 17646315 [PubMed - indexed for MEDLINE]Related articlesFree article