PubMed

Small KS, Brudno M, Hill MM, Sidow A.

Genome Biol. 2007;8(3):R41.

Vinson JP, Jaffe DB, O'Neill K, Karlsson EK, Stange-Thomann N, Anderson S, Mesirov JP, Satoh N, Satou Y, Nusbaum C, Birren B, Galagan JE, Lander ES.

Genome Res. 2005 Aug;15(8):1127-35.

Kim JH, Waterman MS, Li LM.

Genome Res. 2007 Jul;17(7):1101-10. Epub 2007 Jun 13.

Hill MM, Broman KW, Stupka E, Smith WC, Jiang D, Sidow A.

Genome Res. 2008 Aug;18(8):1369-79. Epub 2008 Jun 2.

Donmez N, Bazykin GA, Brudno M, Kondrashov AS.

Genetics. 2009 Feb;181(2):685-90. Epub 2008 Dec 15.

Small KS, Brudno M, Hill MM, Sidow A.

Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5698-703. Epub 2007 Mar 19.

Rumble SM, Lacroute P, Dalca AV, Fiume M, Sidow A, Brudno M.

PLoS Comput Biol. 2009 May;5(5):e1000386. Epub 2009 May 22.

Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, Lee D, Mathewson CA, Olson T, O'connor K, Prabhu AL, Smailus DE, Stott JM, Tsai M, Wye NH, Yang GS, Zhuang J, Holt RA, Putnam NH, Vrebalov J, Giovannoni JJ, Grimwood J, Schmutz J, Rokhsar D, Jones SJ, Marra MA, Tuskan GA, Bohlmann J, Ellis BE, Ritland K, Douglas CJ, Schein JE.

Plant J. 2007 Jun;50(6):1063-78. Epub 2007 May 3.

Silva N, Smith WC.

PLoS One. 2008 Jun 25;3(6):e2552.

Nydam ML, Harrison RG.

Mol Phylogenet Evol. 2010 Aug;56(2):718-26. Epub 2010 Apr 18.

Kerstens HH, Kollers S, Kommadath A, Del Rosario M, Dibbits B, Kinders SM, Crooijmans RP, Groenen MA.

BMC Genomics. 2009 Jan 6;10:4.

Matsuoka T, Awazu S, Satoh N, Sasakura Y.

Dev Growth Differ. 2004 Jun;46(3):249-55.

Myers G.

Proc Int Conf Intell Syst Mol Biol. 1999:202-10.

Quinn NL, Levenkova N, Chow W, Bouffard P, Boroevich KA, Knight JR, Jarvie TP, Lubieniecki KP, Desany BA, Koop BF, Harkins TT, Davidson WS.

BMC Genomics. 2008 Aug 28;9:404.

Dohm JC, Lange C, Reinhardt R, Himmelbauer H.

Plant J. 2009 Jan;57(1):14-26. Epub 2008 Aug 29.

Amaral AJ, Megens HJ, Kerstens HH, Heuven HC, Dibbits B, Crooijmans RP, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Aug 12;10:374.

Dubchak I, Poliakov A, Kislyuk A, Brudno M.

Genome Res. 2009 Apr;19(4):682-9. Epub 2009 Jan 28.

Wicker T, Krattinger SG, Lagudah ES, Komatsuda T, Pourkheirandish M, Matsumoto T, Cloutier S, Reiser L, Kanamori H, Sato K, Perovic D, Stein N, Keller B.

Plant Physiol. 2009 Jan;149(1):258-70. Epub 2008 Nov 14.

Dong Q, Wilkerson MD, Brendel V.

BMC Bioinformatics. 2007 May 9;8:151.

Ossowski S, Schneeberger K, Clark RM, Lanz C, Warthmann N, Weigel D.

Genome Res. 2008 Dec;18(12):2024-33. Epub 2008 Sep 25.