Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

    Results: 1 to 20 of 131

    1.

    Reactome: a knowledge base of biologic pathways and processes.

    Vastrik I, D'Eustachio P, Schmidt E, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, Matthews L, Wu G, Birney E, Stein L.

    Genome Biol. 2007;8(3):R39. Erratum in: Genome Biol. 2009 Feb 4;10(2):402. Joshi-Tope, Geeta [removed].

    PMID:
    17367534
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Reactome knowledgebase of human biological pathways and processes.

    D'Eustachio P.

    Methods Mol Biol. 2011;694:49-61.

    PMID:
    21082427
    [PubMed - indexed for MEDLINE]
    3.

    Reactome pathway analysis to enrich biological discovery in proteomics data sets.

    Haw R, Hermjakob H, D'Eustachio P, Stein L.

    Proteomics. 2011 Sep;11(18):3598-613. doi: 10.1002/pmic.201100066.

    PMID:
    21751369
    [PubMed - indexed for MEDLINE]
    4.

    Reactome knowledgebase of human biological pathways and processes.

    Matthews L, Gopinath G, Gillespie M, Caudy M, Croft D, de Bono B, Garapati P, Hemish J, Hermjakob H, Jassal B, Kanapin A, Lewis S, Mahajan S, May B, Schmidt E, Vastrik I, Wu G, Birney E, Stein L, D'Eustachio P.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D619-22. Epub 2008 Nov 3.

    PMID:
    18981052
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    The Reactome BioMart.

    Haw RA, Croft D, Yung CK, Ndegwa N, D'Eustachio P, Hermjakob H, Stein LD.

    Database (Oxford). 2011 Oct 19;2011:bar031. Print 2011.

    PMID:
    22012987
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Reactome: a database of reactions, pathways and biological processes.

    Croft D, O'Kelly G, Wu G, Haw R, Gillespie M, Matthews L, Caudy M, Garapati P, Gopinath G, Jassal B, Jupe S, Kalatskaya I, Mahajan S, May B, Ndegwa N, Schmidt E, Shamovsky V, Yung C, Birney E, Hermjakob H, D'Eustachio P, Stein L.

    Nucleic Acids Res. 2011 Jan;39(Database issue):D691-7. Epub 2010 Nov 9.

    PMID:
    21067998
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    METANNOGEN: compiling features of biochemical reactions needed for the reconstruction of metabolic networks.

    Gille C, Hoffmann S, Holzhütter HG.

    BMC Syst Biol. 2007 Jan 9;1:5.

    PMID:
    17408512
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways.

    Spasic I, Simeonidis E, Messiha HL, Paton NW, Kell DB.

    Bioinformatics. 2009 Jun 1;25(11):1404-11. Epub 2009 Mar 31.

    PMID:
    19336445
    [PubMed - indexed for MEDLINE]
    Free Article
    9.

    Reactome: a knowledgebase of biological pathways.

    Joshi-Tope G, Gillespie M, Vastrik I, D'Eustachio P, Schmidt E, de Bono B, Jassal B, Gopinath GR, Wu GR, Matthews L, Lewis S, Birney E, Stein L.

    Nucleic Acids Res. 2005 Jan 1;33(Database issue):D428-32.

    PMID:
    15608231
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    HPD: an online integrated human pathway database enabling systems biology studies.

    Chowbina SR, Wu X, Zhang F, Li PM, Pandey R, Kasamsetty HN, Chen JY.

    BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S5.

    PMID:
    19811689
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.

    Herrgård MJ, Swainston N, Dobson P, Dunn WB, Arga KY, Arvas M, Blüthgen N, Borger S, Costenoble R, Heinemann M, Hucka M, Le Novère N, Li P, Liebermeister W, Mo ML, Oliveira AP, Petranovic D, Pettifer S, Simeonidis E, Smallbone K, Spasić I, Weichart D, Brent R, Broomhead DS, Westerhoff HV, Kirdar B, Penttilä M, Klipp E, Palsson BØ, Sauer U, Oliver SG, Mendes P, Nielsen J, Kell DB.

    Nat Biotechnol. 2008 Oct;26(10):1155-60.

    PMID:
    18846089
    [PubMed - indexed for MEDLINE]
    12.

    R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases.

    Antonov AV, Schmidt EE, Dietmann S, Krestyaninova M, Hermjakob H.

    Nucleic Acids Res. 2010 Jul;38(Web Server issue):W78-83. Epub 2010 Jun 2.

    PMID:
    20519200
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    PROTEOME-3D: an interactive bioinformatics tool for large-scale data exploration and knowledge discovery.

    Lundgren DH, Eng J, Wright ME, Han DK.

    Mol Cell Proteomics. 2003 Nov;2(11):1164-76. Epub 2003 Sep 7.

    PMID:
    12960178
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    A genomewide functional network for the laboratory mouse.

    Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG.

    PLoS Comput Biol. 2008 Sep 26;4(9):e1000165.

    PMID:
    18818725
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling.

    Reyes-Palomares A, Montañez R, Real-Chicharro A, Chniber O, Kerzazi A, Navas-Delgado I, Medina MA, Aldana-Montes JF, Sánchez-Jiménez F.

    Bioinformatics. 2009 Mar 15;25(6):834-5. Epub 2009 Feb 2.

    PMID:
    19189977
    [PubMed - indexed for MEDLINE]
    Free Article
    16.

    BioPP: a tool for web-publication of biological networks.

    Viswanathan GA, Nudelman G, Patil S, Sealfon SC.

    BMC Bioinformatics. 2007 May 22;8:168.

    PMID:
    17519033
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    CellCircuits: a database of protein network models.

    Mak HC, Daly M, Gruebel B, Ideker T.

    Nucleic Acids Res. 2007 Jan;35(Database issue):D538-45. Epub 2006 Nov 29.

    PMID:
    17135207
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Biological network mapping and source signal deduction.

    Brynildsen MP, Wu TY, Jang SS, Liao JC.

    Bioinformatics. 2007 Jul 15;23(14):1783-91. Epub 2007 May 11.

    PMID:
    17495996
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison.

    Mithani A, Preston GM, Hein J.

    Bioinformatics. 2009 Jul 15;25(14):1831-2. Epub 2009 Apr 27.

    PMID:
    19398450
    [PubMed - indexed for MEDLINE]
    Free Article
    20.

    Analysis on relationship between extreme pathways and correlated reaction sets.

    Xi Y, Chen YP, Cao M, Wang W, Wang F.

    BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S58.

    PMID:
    19208161
    [PubMed - indexed for MEDLINE]
    Free PMC Article

      Display Settings:

      Format
      Items per page
      Sort by

      Send to:

      Choose Destination

      Supplemental Content

      Find related data

      Write to the Help Desk