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    Results: 1 to 20 of 124

    1.

    GOTax: investigating biological processes and biochemical activities along the taxonomic tree.

    Schlicker A, Rahnenführer J, Albrecht M, Lengauer T, Domingues FS.

    Genome Biol. 2007;8(3):R33.

    PMID:
    17346342
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    InterPro and InterProScan: tools for protein sequence classification and comparison.

    Mulder N, Apweiler R.

    Methods Mol Biol. 2007;396:59-70.

    PMID:
    18025686
    [PubMed - indexed for MEDLINE]
    3.

    A new measure for functional similarity of gene products based on Gene Ontology.

    Schlicker A, Domingues FS, Rahnenführer J, Lengauer T.

    BMC Bioinformatics. 2006 Jun 15;7:302.

    PMID:
    16776819
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

    Häkkinen J, Vincic G, Månsson O, Wårell K, Levander F.

    J Proteome Res. 2009 Jun;8(6):3037-43.

    PMID:
    19354269
    [PubMed - indexed for MEDLINE]
    5.

    FUNYBASE: a FUNgal phYlogenomic dataBASE.

    Marthey S, Aguileta G, Rodolphe F, Gendrault A, Giraud T, Fournier E, Lopez-Villavicencio M, Gautier A, Lebrun MH, Chiapello H.

    BMC Bioinformatics. 2008 Oct 27;9:456.

    PMID:
    18954438
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    GreenPhylDB: a database for plant comparative genomics.

    Conte MG, Gaillard S, Lanau N, Rouard M, Périn C.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D991-8. Epub 2007 Nov 5.

    PMID:
    17986457
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    EDGAR: a software framework for the comparative analysis of prokaryotic genomes.

    Blom J, Albaum SP, Doppmeier D, Pühler A, Vorhölter FJ, Zakrzewski M, Goesmann A.

    BMC Bioinformatics. 2009 May 20;10:154.

    PMID:
    19457249
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    PRIME: a graphical interface for integrating genomic/proteomic databases.

    Facius A, Englbrecht C, Birzele F, Groscurth A, Benjamin S, Wanka S, Mewes W.

    Proteomics. 2005 Jan;5(1):76-80.

    PMID:
    15744835
    [PubMed - indexed for MEDLINE]
    9.

    SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny.

    Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C, Madera M, Chothia C, Gough J.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D380-6. Epub 2008 Nov 26.

    PMID:
    19036790
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Databases of homologous gene families for comparative genomics.

    Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G.

    BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S3.

    PMID:
    19534752
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    PCR primer selection tool optimized for high-throughput proteomics and structural genomics.

    Canaves JM, Morse A, West B.

    Biotechniques. 2004 Jun;36(6):1040-2. No abstract available.

    PMID:
    15211755
    [PubMed - indexed for MEDLINE]
    12.

    DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

    Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

    PMID:
    17576678
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    A grid environment for high-throughput proteomics.

    Cannataro M, Barla A, Flor R, Jurman G, Merler S, Paoli S, Tradigo G, Veltri P, Furlanello C.

    IEEE Trans Nanobioscience. 2007 Jun;6(2):117-23.

    PMID:
    17695745
    [PubMed - indexed for MEDLINE]
    14.

    Taxonomy workbench.

    Wildpaner M, Schneider G, Schleiffer A, Eisenhaber F.

    Bioinformatics. 2001 Dec;17(12):1179-82.

    PMID:
    11751226
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    LeARN: a platform for detecting, clustering and annotating non-coding RNAs.

    Noirot C, Gaspin C, Schiex T, Gouzy J.

    BMC Bioinformatics. 2008 Jan 14;9:21.

    PMID:
    18194551
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    A novel method for large tree visualization.

    Heard J, Kaufmann W, Guan X.

    Bioinformatics. 2009 Feb 15;25(4):557-8. Epub 2009 Jan 7.

    PMID:
    19129207
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.

    Smith AK, Cheung KH, Yip KY, Schultz M, Gerstein MK.

    BMC Bioinformatics. 2007 May 9;8 Suppl 3:S5. Review.

    PMID:
    17493288
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    ButterflyBase: a platform for lepidopteran genomics.

    Papanicolaou A, Gebauer-Jung S, Blaxter ML, Owen McMillan W, Jiggins CD.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D582-7. Epub 2007 Oct 12.

    PMID:
    17933781
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    BiomarkerDigger: a versatile disease proteome database and analysis platform for the identification of plasma cancer biomarkers.

    Jeong SK, Kwon MS, Lee EY, Lee HJ, Cho SY, Kim H, Yoo JS, Omenn GS, Aebersold R, Hanash S, Paik YK.

    Proteomics. 2009 Jul;9(14):3729-40.

    PMID:
    19639590
    [PubMed - indexed for MEDLINE]

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