PubMed

Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS.

Genome Biol. 2007;8(2):R24.

Li L.

J Comput Biol. 2009 Feb;16(2):317-29.

Bailey TL.

Methods Mol Biol. 2008;452:231-51. Review.

Bailey TL, Bodén M, Whitington T, Machanick P.

BMC Bioinformatics. 2010 Apr 9;11:179.

Wei Z, Jensen ST.

Bioinformatics. 2006 Jul 1;22(13):1577-84. Epub 2006 Apr 21.

Tan SH, Hugo W, Sung WK, Ng SK.

BMC Bioinformatics. 2006 Nov 16;7:502.

Jensen KL, Styczynski MP, Rigoutsos I, Stephanopoulos GN.

Bioinformatics. 2006 Jan 1;22(1):21-8. Epub 2005 Oct 27.

Shida K.

Genome Inform. 2006;17(2):3-13.

Mahony S, Golden A, Smith TJ, Benos PV.

Bioinformatics. 2005 Jun;21 Suppl 1:i283-91.

Jin VX, Apostolos J, Nagisetty NS, Farnham PJ.

Bioinformatics. 2009 Dec 1;25(23):3191-3. Epub 2009 Oct 1.

Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. Epub 2009 May 20.

Narang V, Mittal A, Sung WK.

Bioinformatics. 2010 May 1;26(9):1152-9. Epub 2010 Mar 11.

Bi C, Leeder JS, Vyhlidal CA.

Mol Pharm. 2008 Jan-Feb;5(1):3-16. Epub 2007 Dec 13. Review.

Linhart C, Halperin Y, Shamir R.

Genome Res. 2008 Jul;18(7):1180-9. Epub 2008 Apr 14.

Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80. Epub 2009 Nov 17.

Mahony S, Benos PV.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W253-8. Epub 2007 May 3.

Tateishi E, Miyano S.

Pac Symp Biocomput. 1996:599-613.

Carlson JM, Chakravarty A, DeZiel CE, Gross RH.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W259-64. Epub 2007 May 7.

Bi C.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Jul-Sep;6(3):370-86.

Davey NE, Edwards RJ, Shields DC.

Front Biosci. 2010 Jun 1;15:801-25. Review.