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    Results: 1 to 20 of 107

    2.

    IEDB-3D: structural data within the immune epitope database.

    Ponomarenko J, Papangelopoulos N, Zajonc DM, Peters B, Sette A, Bourne PE.

    Nucleic Acids Res. 2011 Jan;39(Database issue):D1164-70. Epub 2010 Oct 28.

    PMID:
    21030437
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities.

    Sathiamurthy M, Peters B, Bui HH, Sidney J, Mokili J, Wilson SS, Fleri W, McGuinness DL, Bourne PE, Sette A.

    Immunome Res. 2005 Sep 20;1(1):2.

    PMID:
    16305755
    [PubMed]
    Free PMC Article
    4.

    Immune epitope database analysis resource (IEDB-AR).

    Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B.

    Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W513-8. Epub 2008 May 31.

    PMID:
    18515843
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    CED: a conformational epitope database.

    Huang J, Honda W.

    BMC Immunol. 2006 Apr 7;7:7.

    PMID:
    16603068
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    The immune epitope database 2.0.

    Vita R, Zarebski L, Greenbaum JA, Emami H, Hoof I, Salimi N, Damle R, Sette A, Peters B.

    Nucleic Acids Res. 2010 Jan;38(Database issue):D854-62. Epub 2009 Nov 11.

    PMID:
    19906713
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Applications for T-cell epitope queries and tools in the Immune Epitope Database and Analysis Resource.

    Kim Y, Sette A, Peters B.

    J Immunol Methods. 2011 Nov 30;374(1-2):62-9. Epub 2010 Oct 31. Review.

    PMID:
    21047510
    [PubMed - indexed for MEDLINE]
    8.

    PDTD: a web-accessible protein database for drug target identification.

    Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

    BMC Bioinformatics. 2008 Feb 19;9:104.

    PMID:
    18282303
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.

    Porollo A, Meller J.

    BMC Bioinformatics. 2007 Aug 29;8:316.

    PMID:
    17727718
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Curation of complex, context-dependent immunological data.

    Vita R, Vaughan K, Zarebski L, Salimi N, Fleri W, Grey H, Sathiamurthy M, Mokili J, Bui HH, Bourne PE, Ponomarenko J, de Castro R Jr, Chan RK, Sidney J, Wilson SS, Stewart S, Way S, Peters B, Sette A.

    BMC Bioinformatics. 2006 Jul 12;7:341.

    PMID:
    16836764
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Ab and T cell epitopes of influenza A virus, knowledge and opportunities.

    Bui HH, Peters B, Assarsson E, Mbawuike I, Sette A.

    Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):246-51.

    PMID:
    17200302
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    MSDmotif: exploring protein sites and motifs.

    Golovin A, Henrick K.

    BMC Bioinformatics. 2008 Jul 17;9:312.

    PMID:
    18637174
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    ProCMD: a database and 3D web resource for protein C mutants.

    D'Ursi P, Marino F, Caprera A, Milanesi L, Faioni EM, Rovida E.

    BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S11.

    PMID:
    17430555
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    The Innate Immune Database (IIDB).

    Korb M, Rust AG, Thorsson V, Battail C, Li B, Hwang D, Kennedy KA, Roach JC, Rosenberger CM, Gilchrist M, Zak D, Johnson C, Marzolf B, Aderem A, Shmulevich I, Bolouri H.

    BMC Immunol. 2008 Mar 5;9:7.

    PMID:
    18321385
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines.

    Bui HH, Sidney J, Li W, Fusseder N, Sette A.

    BMC Bioinformatics. 2007 Sep 26;8:361.

    PMID:
    17897458
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Using the tools and resources of the RCSB protein data bank.

    Dutta S, M Berman H, F Bluhm W.

    Curr Protoc Bioinformatics. 2007 Dec;Chapter 1:Unit1.9.

    PMID:
    18428680
    [PubMed - indexed for MEDLINE]
    17.

    The design and implementation of the immune epitope database and analysis resource.

    Peters B, Sidney J, Bourne P, Bui HH, Buus S, Doh G, Fleri W, Kronenberg M, Kubo R, Lund O, Nemazee D, Ponomarenko JV, Sathiamurthy M, Schoenberger SP, Stewart S, Surko P, Way S, Wilson S, Sette A.

    Immunogenetics. 2005 Jun;57(5):326-36. Epub 2005 May 14.

    PMID:
    15895191
    [PubMed - indexed for MEDLINE]
    18.

    DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions.

    Yu J, Pacifico S, Liu G, Finley RL Jr.

    BMC Genomics. 2008 Oct 7;9:461.

    PMID:
    18840285
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    MMDB: 3D structures and macromolecular interactions.

    Madej T, Addess KJ, Fong JH, Geer LY, Geer RC, Lanczycki CJ, Liu C, Lu S, Marchler-Bauer A, Panchenko AR, Chen J, Thiessen PA, Wang Y, Zhang D, Bryant SH.

    Nucleic Acids Res. 2012 Jan;40(Database issue):D461-4. Epub 2011 Dec 1.

    PMID:
    22135289
    [PubMed - in process]
    Free PMC Article
    20.

    Automatic annotation of BIND molecular interactions from three-dimensional structures.

    Salama JJ, Donaldson I, Hogue CW.

    Biopolymers. 2001-2002;61(2):111-20.

    PMID:
    11987160
    [PubMed - indexed for MEDLINE]

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