PubMed

Genome display tool: visualizing features in complex data sets.

Viswanath L, Lu Y, Fox GE.

Source Code Biol Med. 2007 Feb 14;2:1.PMID: 17300731 [PubMed]Related articlesFree article

Genomes as geography: using GIS technology to build interactive genome feature maps.

Dolan ME, Holden CC, Beard MK, Bult CJ.

BMC Bioinformatics. 2006 Sep 19;7:416.PMID: 16984652 [PubMed - indexed for MEDLINE]Related articlesFree article

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170.PMID: 18366802 [PubMed - indexed for MEDLINE]Related articlesFree article

SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes.

Lemoine F, Labedan B, Lespinet O.

BMC Bioinformatics. 2008 Dec 16;9:536.PMID: 19087285 [PubMed - indexed for MEDLINE]Related articlesFree article

GenePalette: a universal software tool for genome sequence visualization and analysis.

Rebeiz M, Posakony JW.

Dev Biol. 2004 Jul 15;271(2):431-8.PMID: 15223345 [PubMed - indexed for MEDLINE]Related articles

ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data.

Weddington N, Stuy A, Hiratani I, Ryba T, Yokochi T, Gilbert DM.

BMC Bioinformatics. 2008 Dec 10;9:530.PMID: 19077204 [PubMed - indexed for MEDLINE]Related articlesFree article

Sybil: methods and software for multiple genome comparison and visualization.

Crabtree J, Angiuoli SV, Wortman JR, White OR.

Methods Mol Biol. 2007;408:93-108.PMID: 18314579 [PubMed - indexed for MEDLINE]Related articles

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context.

Faith JJ, Olson AJ, Gardner TS, Sachidanandam R.

BMC Bioinformatics. 2007 Sep 18;8:344.PMID: 17877794 [PubMed - indexed for MEDLINE]Related articlesFree article

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419.PMID: 18840280 [PubMed - indexed for MEDLINE]Related articlesFree article

Arabidopsis Gene Family Profiler (aGFP)--user-oriented transcriptomic database with easy-to-use graphic interface.

Dupl'áková N, Renák D, Hovanec P, Honysová B, Twell D, Honys D.

BMC Plant Biol. 2007 Jul 23;7:39.PMID: 17645793 [PubMed - indexed for MEDLINE]Related articlesFree article

GenColors: annotation and comparative genomics of prokaryotes made easy.

Romualdi A, Felder M, Rose D, Gausmann U, Schilhabel M, Glöckner G, Platzer M, Sühnel J.

Methods Mol Biol. 2007;395:75-96.PMID: 17993668 [PubMed - indexed for MEDLINE]Related articles

The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology.

Hallin PF, Binnewies TT, Ussery DW.

Mol Biosyst. 2008 May;4(5):363-71. Epub 2008 Mar 17.PMID: 18414733 [PubMed - indexed for MEDLINE]Related articles

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes.

Kurtz S, Narechania A, Stein JC, Ware D.

BMC Genomics. 2008 Oct 31;9:517.PMID: 18976482 [PubMed - indexed for MEDLINE]Related articlesFree article

inGeno--an integrated genome and ortholog viewer for improved genome to genome comparisons.

Liang C, Dandekar T.

BMC Bioinformatics. 2006 Oct 20;7:461.PMID: 17054788 [PubMed - indexed for MEDLINE]Related articlesFree article

The CGView Server: a comparative genomics tool for circular genomes.

Grant JR, Stothard P.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W181-4. Epub 2008 Apr 14.PMID: 18411202 [PubMed - indexed for MEDLINE]Related articlesFree article

CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks.

Baumbach J.

BMC Bioinformatics. 2007 Nov 6;8:429.PMID: 17986320 [PubMed - indexed for MEDLINE]Related articlesFree article

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

BMC Bioinformatics. 2009 Feb 3;10:48.PMID: 19192299 [PubMed - indexed for MEDLINE]Related articlesFree article

ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.

Huan T, Sivachenko AY, Harrison SH, Chen JY.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S5.PMID: 18793469 [PubMed - indexed for MEDLINE]Related articlesFree article

OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.

Schreiber F, Pick K, Erpenbeck D, Wörheide G, Morgenstern B.

BMC Bioinformatics. 2009 Jul 16;10:219.PMID: 19607672 [PubMed - indexed for MEDLINE]Related articlesFree article

BPhyOG: an interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.

Luo Y, Fu C, Zhang DY, Lin K.

BMC Bioinformatics. 2007 Jul 25;8:266.PMID: 17650344 [PubMed - indexed for MEDLINE]Related articlesFree article