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    Results: 1 to 20 of 99

    1.

    Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?

    Deshayes C, Perrodou E, Gallien S, Euphrasie D, Schaeffer C, Van-Dorsselaer A, Poch O, Lecompte O, Reyrat JM.

    Genome Biol. 2007;8(2):R20.

    PMID:
    17295914
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    ICDS database: interrupted CoDing sequences in prokaryotic genomes.

    Perrodou E, Deshayes C, Muller J, Schaeffer C, Van Dorsselaer A, Ripp R, Poch O, Reyrat JM, Lecompte O.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D338-43.

    PMID:
    16381882
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences.

    Deshayes C, Perrodou E, Euphrasie D, Frapy E, Poch O, Bifani P, Lecompte O, Reyrat JM.

    BMC Evol Biol. 2008 Mar 6;8:78.

    PMID:
    18325090
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

    Gallien S, Perrodou E, Carapito C, Deshayes C, Reyrat JM, Van Dorsselaer A, Poch O, Schaeffer C, Lecompte O.

    Genome Res. 2009 Jan;19(1):128-35. Epub 2008 Oct 27.

    PMID:
    18955433
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Amino acid translation program for full-length cDNA sequences with frameshift errors.

    Fukunishi Y, Hayashizaki Y.

    Physiol Genomics. 2001 Mar 8;5(2):81-7.

    PMID:
    11242592
    [PubMed - indexed for MEDLINE]
    7.

    Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence.

    Médigue C, Rose M, Viari A, Danchin A.

    Genome Res. 1999 Nov;9(11):1116-27.

    PMID:
    10568751
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization.

    Vindal V, Suma K, Ranjan A.

    BMC Genomics. 2007 Aug 23;8:289.

    PMID:
    17714599
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Identifying sigma factors in Mycobacterium smegmatis by comparative genomic analysis.

    Waagmeester A, Thompson J, Reyrat JM.

    Trends Microbiol. 2005 Nov;13(11):505-9. Epub 2005 Sep 2.

    PMID:
    16140533
    [PubMed - indexed for MEDLINE]
    10.

    Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes.

    Gupta N, Benhamida J, Bhargava V, Goodman D, Kain E, Kerman I, Nguyen N, Ollikainen N, Rodriguez J, Wang J, Lipton MS, Romine M, Bafna V, Smith RD, Pevzner PA.

    Genome Res. 2008 Jul;18(7):1133-42. Epub 2008 Apr 21.

    PMID:
    18426904
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies.

    Aury JM, Cruaud C, Barbe V, Rogier O, Mangenot S, Samson G, Poulain J, Anthouard V, Scarpelli C, Artiguenave F, Wincker P.

    BMC Genomics. 2008 Dec 16;9:603.

    PMID:
    19087275
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    An orphan gyrB in the Mycobacterium smegmatis genome uncovered by comparative genomics.

    Jain P, Nagaraja V.

    J Genet. 2002 Dec;81(3):105-10.

    PMID:
    12717039
    [PubMed - indexed for MEDLINE]
    Free Article
    13.

    Draft versus finished sequence data for DNA and protein diagnostic signature development.

    Gardner SN, Lam MW, Smith JR, Torres CL, Slezak TR.

    Nucleic Acids Res. 2005 Oct 20;33(18):5838-50. Print 2005.

    PMID:
    16243783
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Proteogenomics: needs and roles to be filled by proteomics in genome annotation.

    Ansong C, Purvine SO, Adkins JN, Lipton MS, Smith RD.

    Brief Funct Genomic Proteomic. 2008 Jan;7(1):50-62. Epub 2008 Mar 10. Review.

    PMID:
    18334489
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    A computational genomics pipeline for prokaryotic sequencing projects.

    Kislyuk AO, Katz LS, Agrawal S, Hagen MS, Conley AB, Jayaraman P, Nelakuditi V, Humphrey JC, Sammons SA, Govil D, Mair RD, Tatti KM, Tondella ML, Harcourt BH, Mayer LW, Jordan IK.

    Bioinformatics. 2010 Aug 1;26(15):1819-26. Epub 2010 Jun 2.

    PMID:
    20519285
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    The complete genome of an individual by massively parallel DNA sequencing.

    Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM.

    Nature. 2008 Apr 17;452(7189):872-6.

    PMID:
    18421352
    [PubMed - indexed for MEDLINE]
    17.

    Error and error mitigation in low-coverage genome assemblies.

    Hubisz MJ, Lin MF, Kellis M, Siepel A.

    PLoS One. 2011 Feb 14;6(2):e17034.

    PMID:
    21340033
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Expressed peptide tags: an additional layer of data for genome annotation.

    Savidor A, Donahoo RS, Hurtado-Gonzales O, Verberkmoes NC, Shah MB, Lamour KH, McDonald WH.

    J Proteome Res. 2006 Nov;5(11):3048-58.

    PMID:
    17081056
    [PubMed - indexed for MEDLINE]
    19.

    Single-molecule DNA sequencing technologies for future genomics research.

    Gupta PK.

    Trends Biotechnol. 2008 Nov;26(11):602-11. Epub 2008 Aug 21. Review.

    PMID:
    18722683
    [PubMed - indexed for MEDLINE]
    20.

    [Prediction of functionally related proteins by comparative genomics in silico].

    Piatnitskiĭ MA, Lisitsa AV, Archakov AI.

    Biomed Khim. 2009 May-Jun;55(3):230-46. Review. Russian.

    PMID:
    19662999
    [PubMed - indexed for MEDLINE]

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