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    Results: 1 to 20 of 101

    1.

    Genome re-annotation: a wiki solution?

    Salzberg SL.

    Genome Biol. 2007;8(1):102.

    PMID:
    17274839
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.

    Cantarel BL, Korf I, Robb SM, Parra G, Ross E, Moore B, Holt C, Sánchez Alvarado A, Yandell M.

    Genome Res. 2008 Jan;18(1):188-96. Epub 2007 Nov 19.

    PMID:
    18025269
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    New bioinformatics tools for viral genome analyses at Viral Bioinformatics--Canada.

    Esteban DJ, Da Silva M, Upton C.

    Pharmacogenomics. 2005 Apr;6(3):271-80.

    PMID:
    16013958
    [PubMed - indexed for MEDLINE]
    4.

    Genquire: genome annotation browser/editor.

    Wilkinson MD, Block D, Crosby WL.

    Bioinformatics. 2002 Oct;18(10):1398-9.

    PMID:
    12376386
    [PubMed - indexed for MEDLINE]
    Free Article
    5.

    The Gene Wiki: community intelligence applied to human gene annotation.

    Huss JW 3rd, Lindenbaum P, Martone M, Roberts D, Pizarro A, Valafar F, Hogenesch JB, Su AI.

    Nucleic Acids Res. 2010 Jan;38(Database issue):D633-9. Epub 2009 Sep 15.

    PMID:
    19755503
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Restauro-G: a rapid genome re-annotation system for comparative genomics.

    Tamaki S, Arakawa K, Kono N, Tomita M.

    Genomics Proteomics Bioinformatics. 2007 Feb;5(1):53-8.

    PMID:
    17572364
    [PubMed - indexed for MEDLINE]
    7.

    GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.

    Romualdi A, Siddiqui R, Glöckner G, Lehmann R, Sühnel J.

    Bioinformatics. 2005 Sep 15;21(18):3669-71. Epub 2005 Aug 2.

    PMID:
    16076887
    [PubMed - indexed for MEDLINE]
    Free Article
    8.

    Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome.

    Tcherepanov V, Ehlers A, Upton C.

    BMC Genomics. 2006 Jun 13;7:150.

    PMID:
    16772042
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information.

    Lorenzi HA, Puiu D, Miller JR, Brinkac LM, Amedeo P, Hall N, Caler EV.

    PLoS Negl Trop Dis. 2010 Jun 15;4(6):e716.

    PMID:
    20559563
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    MUTAGEN: multi-user tool for annotating genomes.

    Brügger K, Redder P, Skovgaard M.

    Bioinformatics. 2003 Dec 12;19(18):2480-1.

    PMID:
    14668237
    [PubMed - indexed for MEDLINE]
    Free Article
    11.

    A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.

    Green ML, Karp PD.

    BMC Bioinformatics. 2004 Jun 9;5:76.

    PMID:
    15189570
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

    Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

    PMID:
    17576678
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    AGeS: a software system for microbial genome sequence annotation.

    Kumar K, Desai V, Cheng L, Khitrov M, Grover D, Satya RV, Yu C, Zavaljevski N, Reifman J.

    PLoS One. 2011 Mar 7;6(3):e17469.

    PMID:
    21408217
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    The comprehensive microbial resource.

    Davidsen T, Beck E, Ganapathy A, Montgomery R, Zafar N, Yang Q, Madupu R, Goetz P, Galinsky K, White O, Sutton G.

    Nucleic Acids Res. 2010 Jan;38(Database issue):D340-5. Epub 2009 Nov 5.

    PMID:
    19892825
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    The UCSC Genome Browser database: update 2010.

    Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, Fujita PA, Diekhans M, Smith KE, Rosenbloom KR, Raney BJ, Pohl A, Pheasant M, Meyer LR, Learned K, Hsu F, Hillman-Jackson J, Harte RA, Giardine B, Dreszer TR, Clawson H, Barber GP, Haussler D, Kent WJ.

    Nucleic Acids Res. 2010 Jan;38(Database issue):D613-9. Epub 2009 Nov 11.

    PMID:
    19906737
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.

    Cruveiller S, Le Saux J, Vallenet D, Lajus A, Bocs S, Médigue C.

    Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W471-9.

    PMID:
    15980515
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.

    Linke B, McHardy AC, Neuweger H, Krause L, Meyer F.

    Appl Bioinformatics. 2006;5(3):193-8.

    PMID:
    16922601
    [PubMed - indexed for MEDLINE]
    19.

    Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence.

    Gundogdu O, Bentley SD, Holden MT, Parkhill J, Dorrell N, Wren BW.

    BMC Genomics. 2007 Jun 12;8:162.

    PMID:
    17565669
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    GARSA: genomic analysis resources for sequence annotation.

    Dávila AM, Lorenzini DM, Mendes PN, Satake TS, Sousa GR, Campos LM, Mazzoni CJ, Wagner G, Pires PF, Grisard EC, Cavalcanti MC, Campos ML.

    Bioinformatics. 2005 Dec 1;21(23):4302-3. Epub 2005 Oct 6.

    PMID:
    16210424
    [PubMed - indexed for MEDLINE]
    Free Article

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