My NCBISign In
RSS Settings
  • Search:

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

    Results: 1 to 20 of 99

    1.

    An informatic pipeline for the data capture and submission of quantitative proteomic data using iTRAQ.

    Siepen JA, Swainston N, Jones AR, Hart SR, Hermjakob H, Jones P, Hubbard SJ.

    Proteome Sci. 2007 Feb 1;5:4.PMID: 17270041 [PubMed]Related articlesFree article

    2.

    PRIDE: new developments and new datasets.

    Jones P, Côté RG, Cho SY, Klie S, Martens L, Quinn AF, Thorneycroft D, Hermjakob H.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D878-83. Epub 2007 Nov 22.PMID: 18033805 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    An automated proteomic data analysis workflow for mass spectrometry.

    Pendarvis K, Kumar R, Burgess SC, Nanduri B.

    BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S17.PMID: 19811682 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    PRIDE: a public repository of protein and peptide identifications for the proteomics community.

    Jones P, Côté RG, Martens L, Quinn AF, Taylor CF, Derache W, Hermjakob H, Apweiler R.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D659-63.PMID: 16381953 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Precise protein quantification based on peptide quantification using iTRAQ.

    Boehm AM, Pütz S, Altenhöfer D, Sickmann A, Falk M.

    BMC Bioinformatics. 2007 Jun 21;8:214.PMID: 17584939 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    A uniform proteomics MS/MS analysis platform utilizing open XML file formats.

    Keller A, Eng J, Zhang N, Li XJ, Aebersold R.

    Mol Syst Biol. 2005;1:2005.0017. Epub 2005 Aug 2.PMID: 16729052 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats.

    Falkner JA, Falkner JW, Andrews PC.

    Bioinformatics. 2007 Jan 15;23(2):262-3. Epub 2006 Nov 22.PMID: 17121776 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    MASCOT HTML and XML parser: an implementation of a novel object model for protein identification data.

    Yang CG, Granite SJ, Van Eyk JE, Winslow RL.

    Proteomics. 2006 Nov;6(21):5688-93.PMID: 17006878 [PubMed - indexed for MEDLINE]Related articles

    9.

    Using the PRIDE proteomics identifications database for knowledge discovery and data analysis.

    Jones P, Martens L.

    Methods Mol Biol. 2010;604:297-307.PMID: 20013379 [PubMed - indexed for MEDLINE]Related articles

    10.

    Trans-proteomic pipeline: a pipeline for proteomic analysis.

    Pedrioli PG.

    Methods Mol Biol. 2010;604:213-38.PMID: 20013374 [PubMed - indexed for MEDLINE]Related articles

    11.

    i-Tracker: for quantitative proteomics using iTRAQ.

    Shadforth IP, Dunkley TP, Lilley KS, Bessant C.

    BMC Genomics. 2005 Oct 20;6:145.PMID: 16242023 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Quantitative proteomics using uniform (15)N-labeling, MASCOT, and the trans-proteomic pipeline.

    Palmblad M, Bindschedler LV, Cramer R.

    Proteomics. 2007 Oct;7(19):3462-9.PMID: 17726679 [PubMed - indexed for MEDLINE]Related articles

    13.

    The PRIDE proteomics identifications database: data submission, query, and dataset comparison.

    Jones P, Côté R.

    Methods Mol Biol. 2008;484:287-303.PMID: 18592187 [PubMed - indexed for MEDLINE]Related articles

    14.

    Capture and analysis of quantitative proteomic data.

    Lau KW, Jones AR, Swainston N, Siepen JA, Hubbard SJ.

    Proteomics. 2007 Aug;7(16):2787-99. Review.PMID: 17640002 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data.

    Häkkinen J, Vincic G, Månsson O, Wårell K, Levander F.

    J Proteome Res. 2009 Jun;8(6):3037-43.PMID: 19354269 [PubMed - indexed for MEDLINE]Related articles

    16.

    VEMS: iTRAQ tool for database dependent search, quantitation and result storage.

    Rodríguez-Suárez E, Gubb E, Alzueta IF, Falcón-Pérez JM, Amorim A, Elortza F, Matthiesen R.

    Proteomics. 2010 Feb 5. [Epub ahead of print]PMID: 20140907 [PubMed - as supplied by publisher]Related articles

    17.

    iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer.

    Griffin TJ, Xie H, Bandhakavi S, Popko J, Mohan A, Carlis JV, Higgins L.

    J Proteome Res. 2007 Nov;6(11):4200-9. Epub 2007 Sep 29.PMID: 17902639 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    ISPIDER Central: an integrated database web-server for proteomics.

    Siepen JA, Belhajjame K, Selley JN, Embury SM, Paton NW, Goble CA, Oliver SG, Stevens R, Zamboulis L, Martin N, Poulovassillis A, Jones P, Côté R, Hermjakob H, Pentony MM, Jones DT, Orengo CA, Hubbard SJ.

    Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W485-90. Epub 2008 Apr 25.PMID: 18440977 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    A guide to the Proteomics Identifications Database proteomics data repository.

    Vizcaíno JA, Côté R, Reisinger F, Foster JM, Mueller M, Rameseder J, Hermjakob H, Martens L.

    Proteomics. 2009 Sep;9(18):4276-83.PMID: 19662629 [PubMed - indexed for MEDLINE]Related articles

    20.

    Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

    Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

    BMC Bioinformatics. 2008 Dec 16;9:542.PMID: 19087345 [PubMed - indexed for MEDLINE]Related articlesFree article

    Display Settings:

    Format
    Items per page
    Sort by

    Send to:

    Choose Destination

    Supplemental Content

    Filter your results:

    Find related data

    Recent activity

    You are here: NCBI > Literature > PubMed
    Write to the Help Desk