Warning: The NCBI web site requires JavaScript to function. more...
Prediction of effective genome size in metagenomic samples.
Raes J, Korbel JO, Lercher MJ, von Mering C, Bork P.
Genome Biol. 2007;8(1):R10.
Related citations
An ORFome assembly approach to metagenomics sequences analysis.
Ye Y, Tang H.
Comput Syst Bioinformatics Conf. 2008;7:3-13.
Gene prediction in metagenomic fragments: a large scale machine learning approach.
Hoff KJ, Tech M, Lingner T, Daniel R, Morgenstern B, Meinicke P.
BMC Bioinformatics. 2008 Apr 28;9:217.
One bacterial cell, one complete genome.
Woyke T, Tighe D, Mavromatis K, Clum A, Copeland A, Schackwitz W, Lapidus A, Wu D, McCutcheon JP, McDonald BR, Moran NA, Bristow J, Cheng JF.
PLoS One. 2010 Apr 23;5(4):e10314.
A computational genomics pipeline for prokaryotic sequencing projects.
Kislyuk AO, Katz LS, Agrawal S, Hagen MS, Conley AB, Jayaraman P, Nelakuditi V, Humphrey JC, Sammons SA, Govil D, Mair RD, Tatti KM, Tondella ML, Harcourt BH, Mayer LW, Jordan IK.
Bioinformatics. 2010 Aug 1;26(15):1819-26. Epub 2010 Jun 2.
Application of suppressive subtractive hybridization to uncover the metagenomic diversity of environmental samples.
Galbraith EA, Antonopoulos DA, White BA.
Methods Mol Biol. 2008;410:295-333.
Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models.
Brady A, Salzberg SL.
Nat Methods. 2009 Sep;6(9):673-6. Epub 2009 Aug 2.
Whole-genome sequencing of unculturable bacterium using whole-genome amplification.
Hongoh Y, Toyoda A.
Methods Mol Biol. 2011;733:25-33.
Finding novel genes in bacterial communities isolated from the environment.
Krause L, Diaz NN, Bartels D, Edwards RA, Pühler A, Rohwer F, Meyer F, Stoye J.
Bioinformatics. 2006 Jul 15;22(14):e281-9.
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences.
Noguchi H, Park J, Takagi T.
Nucleic Acids Res. 2006;34(19):5623-30. Epub 2006 Oct 5.
Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly.
Dutilh BE, Huynen MA, Strous M.
Bioinformatics. 2009 Nov 1;25(21):2878-81. Epub 2009 Jun 19.
A novel abundance-based algorithm for binning metagenomic sequences using l-tuples.
Wu YW, Ye Y.
J Comput Biol. 2011 Mar;18(3):523-34.
J Bioinform Comput Biol. 2009 Jun;7(3):455-71.
Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.
Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW.
Funct Integr Genomics. 2006 Jul;6(3):165-85. Epub 2006 May 12. Review.
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.
Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J.
BMC Bioinformatics. 2009 Dec 18;10:430.
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
Mavromatis K, Ivanova N, Barry K, Shapiro H, Goltsman E, McHardy AC, Rigoutsos I, Salamov A, Korzeniewski F, Land M, Lapidus A, Grigoriev I, Richardson P, Hugenholtz P, Kyrpides NC.
Nat Methods. 2007 Jun;4(6):495-500. Epub 2007 Apr 29.
Short read fragment assembly of bacterial genomes.
Chaisson MJ, Pevzner PA.
Genome Res. 2008 Feb;18(2):324-30. Epub 2007 Dec 14.
Metagenomics: application of genomics to uncultured microorganisms.
Handelsman J.
Microbiol Mol Biol Rev. 2004 Dec;68(4):669-85. Review.
Identification of chicken-specific fecal microbial sequences using a metagenomic approach.
Lu J, Santo Domingo J, Shanks OC.
Water Res. 2007 Aug;41(16):3561-74. Epub 2007 May 24.
Artificial and natural duplicates in pyrosequencing reads of metagenomic data.
Niu B, Fu L, Sun S, Li W.
BMC Bioinformatics. 2010 Apr 13;11:187.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on