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    Results: 1 to 20 of 1145

    1.

    GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists.

    Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A.

    Genome Biol. 2007;8(1):R3.

    PMID:
    17204154
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.

    Nogales-Cadenas R, Carmona-Saez P, Vazquez M, Vicente C, Yang X, Tirado F, Carazo JM, Pascual-Montano A.

    Nucleic Acids Res. 2009 Jul;37(Web Server issue):W317-22. Epub 2009 May 22.

    PMID:
    19465387
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    FunSpec: a web-based cluster interpreter for yeast.

    Robinson MD, Grigull J, Mohammad N, Hughes TR.

    BMC Bioinformatics. 2002 Nov 13;3:35. Epub 2002 Nov 13.

    PMID:
    12431279
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Gene Ontology annotations at SGD: new data sources and annotation methods.

    Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. Epub 2007 Nov 3.

    PMID:
    17982175
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    bioNMF: a web-based tool for nonnegative matrix factorization in biology.

    Mejía-Roa E, Carmona-Saez P, Nogales R, Vicente C, Vázquez M, Yang XY, García C, Tirado F, Pascual-Montano A.

    Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W523-8. Epub 2008 May 30.

    PMID:
    18515346
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    A web-enabled database of human gene expression controlled annotations for gene list functional evaluation.

    Ceresa M, Masseroli M, Campi A.

    Conf Proc IEEE Eng Med Biol Soc. 2007;2007:394-7.

    PMID:
    18001973
    [PubMed - indexed for MEDLINE]
    7.

    A systematic approach to infer biological relevance and biases of gene network structures.

    Antonov AV, Tetko IV, Mewes HW.

    Nucleic Acids Res. 2006 Jan 10;34(1):e6.

    PMID:
    16407322
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    GeneBrowser 2: an application to explore and identify common biological traits in a set of genes.

    Arrais JP, Fernandes J, Pereira J, Oliveira JL.

    BMC Bioinformatics. 2010 Jul 21;11:389.

    PMID:
    20663121
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    TICL--a web tool for network-based interpretation of compound lists inferred by high-throughput metabolomics.

    Antonov AV, Dietmann S, Wong P, Mewes HW.

    FEBS J. 2009 Apr;276(7):2084-94.

    PMID:
    19292876
    [PubMed - indexed for MEDLINE]
    10.

    g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.

    Reimand J, Kull M, Peterson H, Hansen J, Vilo J.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W193-200. Epub 2007 May 3.

    PMID:
    17478515
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    GeneTrail--advanced gene set enrichment analysis.

    Backes C, Keller A, Kuentzer J, Kneissl B, Comtesse N, Elnakady YA, Müller R, Meese E, Lenhof HP.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W186-92. Epub 2007 May 25.

    PMID:
    17526521
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

    Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

    BMC Genomics. 2009 Sep 3;10:411.

    PMID:
    19728865
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Combining multisource information through functional-annotation-based weighting: gene function prediction in yeast.

    Ray SS, Bandyopadhyay S, Pal SK.

    IEEE Trans Biomed Eng. 2009 Feb;56(2):229-36. Epub 2008 Sep 30.

    PMID:
    19272921
    [PubMed - indexed for MEDLINE]
    14.

    DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

    Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

    PMID:
    17576678
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

    Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

    BMC Bioinformatics. 2009 Feb 3;10:48.

    PMID:
    19192299
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Assessment of protein set coherence using functional annotations.

    Chagoyen M, Carazo JM, Pascual-Montano A.

    BMC Bioinformatics. 2008 Oct 20;9:444.

    PMID:
    18937846
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

    Hur J, Schuyler AD, States DJ, Feldman EL.

    Bioinformatics. 2009 Mar 15;25(6):838-40. Epub 2009 Feb 2.

    PMID:
    19188191
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Comparing functional annotation analyses with Catmap.

    Breslin T, Edén P, Krogh M.

    BMC Bioinformatics. 2004 Dec 9;5:193.

    PMID:
    15588298
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.

    Al-Shahrour F, Minguez P, Tárraga J, Medina I, Alloza E, Montaner D, Dopazo J.

    Nucleic Acids Res. 2007 Jul;35(Web Server issue):W91-6. Epub 2007 May 3.

    PMID:
    17478504
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.

    Sebestyén E, Nagy T, Suhai S, Barta E.

    BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S6.

    PMID:
    19534755
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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