PubMed

Wang QF, Prabhakar S, Chanan S, Cheng JF, Rubin EM, Boffelli D.

Genome Biol. 2007;8(1):R1.

Prabhakar S, Poulin F, Shoukry M, Afzal V, Rubin EM, Couronne O, Pennacchio LA.

Genome Res. 2006 Jul;16(7):855-63. Epub 2006 Jun 12.

Boffelli D, McAuliffe J, Ovcharenko D, Lewis KD, Ovcharenko I, Pachter L, Rubin EM.

Science. 2003 Feb 28;299(5611):1391-4.

Thomas JW, Touchman JW, Blakesley RW, Bouffard GG, Beckstrom-Sternberg SM, Margulies EH, Blanchette M, Siepel AC, Thomas PJ, McDowell JC, Maskeri B, Hansen NF, Schwartz MS, Weber RJ, Kent WJ, Karolchik D, Bruen TC, Bevan R, Cutler DJ, Schwartz S, Elnitski L, Idol JR, Prasad AB, Lee-Lin SQ, Maduro VV, Summers TJ, Portnoy ME, Dietrich NL, Akhter N, Ayele K, Benjamin B, Cariaga K, Brinkley CP, Brooks SY, Granite S, Guan X, Gupta J, Haghighi P, Ho SL, Huang MC, Karlins E, Laric PL, Legaspi R, Lim MJ, Maduro QL, Masiello CA, Mastrian SD, McCloskey JC, Pearson R, Stantripop S, Tiongson EE, Tran JT, Tsurgeon C, Vogt JL, Walker MA, Wetherby KD, Wiggins LS, Young AC, Zhang LH, Osoegawa K, Zhu B, Zhao B, Shu CL, De Jong PJ, Lawrence CE, Smit AF, Chakravarti A, Haussler D, Green P, Miller W, Green ED.

Nature. 2003 Aug 14;424(6950):788-93.

Cooper GM, Stone EA, Asimenos G; NISC Comparative Sequencing Program, Green ED, Batzoglou S, Sidow A.

Genome Res. 2005 Jul;15(7):901-13. Epub 2005 Jun 17.

Smith NG, Brandström M, Ellegren H.

Genomics. 2004 Nov;84(5):806-13.

Wang QF, Prabhakar S, Wang Q, Moses AM, Chanan S, Brown M, Eisen MB, Cheng JF, Rubin EM, Boffelli D.

Genome Biol. 2006;7(8):R68. Epub 2006 Aug 2.

Vavouri T, Walter K, Gilks WR, Lehner B, Elgar G.

Genome Biol. 2007;8(2):R15.

Frazer KA, Tao H, Osoegawa K, de Jong PJ, Chen X, Doherty MF, Cox DR.

Genome Res. 2004 Mar;14(3):367-72. Epub 2004 Feb 12.

Venkatesh B, Yap WH.

Bioessays. 2005 Jan;27(1):100-7. Review.

Gombart AF, Saito T, Koeffler HP.

BMC Genomics. 2009 Jul 16;10:321.

Zavolan M, Socci ND, Rajewsky N, Gaasterlamd T.

Proc IEEE Comput Soc Bioinform Conf. 2003;2:277-86.

Dermitzakis ET, Reymond A, Scamuffa N, Ucla C, Kirkness E, Rossier C, Antonarakis SE.

Science. 2003 Nov 7;302(5647):1033-5. Epub 2003 Oct 2.

Wagner GP, Fried C, Prohaska SJ, Stadler PF.

Mol Biol Evol. 2004 Nov;21(11):2116-21. Epub 2004 Jul 28.

Peterson BK, Hare EE, Iyer VN, Storage S, Conner L, Papaj DR, Kurashima R, Jang E, Eisen MB.

PLoS One. 2009;4(3):e4688. Epub 2009 Mar 4.

McGaughey DM, Stine ZE, Huynh JL, Vinton RM, McCallion AS.

BMC Genomics. 2009 Jan 7;10:8.

Kague E, Bessling SL, Lee J, Hu G, Passos-Bueno MR, Fisher S.

Dev Biol. 2010 Jan 15;337(2):496-505. Epub 2009 Nov 3.

Kuntz SG, Schwarz EM, DeModena JA, De Buysscher T, Trout D, Shizuya H, Sternberg PW, Wold BJ.

Genome Res. 2008 Dec;18(12):1955-68. Epub 2008 Nov 3.

Ovcharenko I, Stubbs L, Loots GG.

Genomics. 2004 Nov;84(5):890-5.

Bagheri-Fam S, Ferraz C, Demaille J, Scherer G, Pfeifer D.

Genomics. 2001 Nov;78(1-2):73-82.