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    Results: 1 to 20 of 1211

    1.

    GOAnnotator: linking protein GO annotations to evidence text.

    Couto FM, Silva MJ, Lee V, Dimmer E, Camon E, Apweiler R, Kirsch H, Rebholz-Schuhmann D.

    J Biomed Discov Collab. 2006 Dec 20;1:19.

    PMID:
    17181854
    [PubMed]
    Free PMC Article
    2.

    An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

    Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

    BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

    PMID:
    15960829
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Evaluation of BioCreAtIvE assessment of task 2.

    Blaschke C, Leon EA, Krallinger M, Valencia A.

    BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.

    PMID:
    15960828
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

    Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6.

    PMID:
    14681408
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.

    Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW.

    BMC Bioinformatics. 2009 Jul 21;10:228.

    PMID:
    19622167
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

    Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

    BMC Bioinformatics. 2007 Jul 10;8:243.

    PMID:
    17620146
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    The UniProt-GO Annotation database in 2011.

    Dimmer EC, Huntley RP, Alam-Faruque Y, Sawford T, O'Donovan C, Martin MJ, Bely B, Browne P, Mun Chan W, Eberhardt R, Gardner M, Laiho K, Legge D, Magrane M, Pichler K, Poggioli D, Sehra H, Auchincloss A, Axelsen K, Blatter MC, Boutet E, Braconi-Quintaje S, Breuza L, Bridge A, Coudert E, Estreicher A, Famiglietti L, Ferro-Rojas S, Feuermann M, Gos A, Gruaz-Gumowski N, Hinz U, Hulo C, James J, Jimenez S, Jungo F, Keller G, Lemercier P, Lieberherr D, Masson P, Moinat M, Pedruzzi I, Poux S, Rivoire C, Roechert B, Schneider M, Stutz A, Sundaram S, Tognolli M, Bougueleret L, Argoud-Puy G, Cusin I, Duek-Roggli P, Xenarios I, Apweiler R.

    Nucleic Acids Res. 2012 Jan;40(Database issue):D565-70. Epub 2011 Nov 28.

    PMID:
    22123736
    [PubMed - in process]
    Free PMC Article
    8.

    The GOA database in 2009--an integrated Gene Ontology Annotation resource.

    Barrell D, Dimmer E, Huntley RP, Binns D, O'Donovan C, Apweiler R.

    Nucleic Acids Res. 2009 Jan;37(Database issue):D396-403. Epub 2008 Oct 27.

    PMID:
    18957448
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Integrating protein-protein interactions and text mining for protein function prediction.

    Jaeger S, Gaudan S, Leser U, Rebholz-Schuhmann D.

    BMC Bioinformatics. 2008 Jul 22;9 Suppl 8:S2.

    PMID:
    18673526
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.

    Aubry M, Monnier A, Chicault C, de Tayrac M, Galibert MD, Burgun A, Mosser J.

    BMC Bioinformatics. 2006 May 4;7:241.

    PMID:
    16674810
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Mining protein function from text using term-based support vector machines.

    Rice SB, Nenadic G, Stapley BJ.

    BMC Bioinformatics. 2005;6 Suppl 1:S22. Epub 2005 May 24.

    PMID:
    15960835
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Discovering gene annotations in biomedical text databases.

    Cakmak A, Ozsoyoglu G.

    BMC Bioinformatics. 2008 Mar 6;9:143.

    PMID:
    18325104
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Overview of the protein-protein interaction annotation extraction task of BioCreative II.

    Krallinger M, Leitner F, Rodriguez-Penagos C, Valencia A.

    Genome Biol. 2008;9 Suppl 2:S4. Epub 2008 Sep 1.

    PMID:
    18834495
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Gene Ontology annotations at SGD: new data sources and annotation methods.

    Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. Epub 2007 Nov 3.

    PMID:
    17982175
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Assessment of disease named entity recognition on a corpus of annotated sentences.

    Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

    BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3.

    PMID:
    18426548
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Protein annotation as term categorization in the gene ontology using word proximity networks.

    Verspoor K, Cohn J, Joslyn C, Mniszewski S, Rechtsteiner A, Rocha LM, Simas T.

    BMC Bioinformatics. 2005;6 Suppl 1:S20. Epub 2005 May 24.

    PMID:
    15960833
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Implications of compositionality in the gene ontology for its curation and usage.

    Ogren PV, Cohen KB, Hunter L.

    Pac Symp Biocomput. 2005:174-85.

    PMID:
    15759624
    [PubMed - indexed for MEDLINE]
    Free Article
    18.

    The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.

    Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.

    BMC Bioinformatics. 2008 Jan 25;9:52.

    PMID:
    18221520
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Annotating genes using textual patterns.

    Cakmak A, Ozsoyoglu G.

    Pac Symp Biocomput. 2007:221-32.

    PMID:
    17990494
    [PubMed - indexed for MEDLINE]
    Free Article
    20.

    Estimating the annotation error rate of curated GO database sequence annotations.

    Jones CE, Brown AL, Baumann U.

    BMC Bioinformatics. 2007 May 22;8:170.

    PMID:
    17519041
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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