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Development of a pooled probe method for locating small gene families in a physical map of soybean using stress related paralogues and a BAC minimum tile path.

Shopinski KL, Iqbal MJ, Shultz JL, Jayaraman D, Lightfoot DA.

Plant Methods. 2006 Dec 8;2:20.PMID: 17156445 [PubMed]Related articlesFree article

Three minimum tile paths from bacterial artificial chromosome libraries of the soybean (Glycine max cv. 'Forrest'): tools for structural and functional genomics.

Shultz JL, Yesudas C, Yaegashi S, Afzal AJ, Kazi S, Lightfoot DA.

Plant Methods. 2006 May 25;2:9.PMID: 16725032 [PubMed]Related articlesFree article

Genetic marker anchoring by six-dimensional pools for development of a soybean physical map.

Wu X, Zhong G, Findley SD, Cregan P, Stacey G, Nguyen HT.

BMC Genomics. 2008 Jan 22;9:28.PMID: 18211698 [PubMed - indexed for MEDLINE]Related articlesFree article

Re-annotation of the physical map of Glycine max for polyploid-like regions by BAC end sequence driven whole genome shotgun read assembly.

Saini N, Shultz J, Lightfoot DA.

BMC Genomics. 2008 Jul 7;9:323.PMID: 18606011 [PubMed - indexed for MEDLINE]Related articlesFree article

Estimates of conserved microsynteny among the genomes of Glycine max, Medicago truncatula and Arabidopsis thaliana.

Yan HH, Mudge J, Kim DJ, Larsen D, Shoemaker RC, Cook DR, Young ND.

Theor Appl Genet. 2003 May;106(7):1256-65. Epub 2003 Jan 25.PMID: 12748777 [PubMed - indexed for MEDLINE]Related articles

Construction and characterization of a soybean bacterial artificial chromosome library and use of multiple complementary libraries for genome physical mapping.

Wu CC, Nimmakayala P, Santos FA, Springman R, Scheuring C, Meksem K, Lightfoot DA, Zhang HB.

Theor Appl Genet. 2004 Sep;109(5):1041-50. Epub 2004 May 26.PMID: 15164176 [PubMed - indexed for MEDLINE]Related articles

The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max.

Shultz JL, Kurunam D, Shopinski K, Iqbal MJ, Kazi S, Zobrist K, Bashir R, Yaegashi S, Lavu N, Afzal AJ, Yesudas CR, Kassem MA, Wu C, Zhang HB, Town CD, Meksem K, Lightfoot DA.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D758-65.PMID: 16381975 [PubMed - indexed for MEDLINE]Related articlesFree article

A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects.

Thorsen J, Zhu B, Frengen E, Osoegawa K, de Jong PJ, Koop BF, Davidson WS, Høyheim B.

BMC Genomics. 2005 Apr 4;6(1):50.PMID: 15807896 [PubMed - indexed for MEDLINE]Related articlesFree article

Peanut gene expression profiling in developing seeds at different reproduction stages during Aspergillus parasiticus infection.

Guo B, Chen X, Dang P, Scully BT, Liang X, Holbrook CC, Yu J, Culbreath AK.

BMC Dev Biol. 2008 Feb 4;8:12.PMID: 18248674 [PubMed - indexed for MEDLINE]Related articlesFree article

A physical map of a gene-dense region in soybean linkage group A2 near the black seed coat and Rhg (4) loci.

Lewers K, Heinz R, Beard H, Marek L, Matthews B.

Theor Appl Genet. 2002 Feb;104(2-3):254-260.PMID: 12582695 [PubMed - as supplied by publisher]Related articles

Identification and analysis of gene families from the duplicated genome of soybean using EST sequences.

Nelson RT, Shoemaker R.

BMC Genomics. 2006 Aug 9;7:204. Review.PMID: 16899135 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative genomic analysis of sequences sampled from a small region on soybean (Glycine max) molecular linkage group G.

Foster-Hartnett D, Mudge J, Larsen D, Danesh D, Yan H, Denny R, Peñuela S, Young ND.

Genome. 2002 Aug;45(4):634-45.PMID: 12175066 [PubMed - indexed for MEDLINE]Related articles

Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization.

Gardiner J, Schroeder S, Polacco ML, Sanchez-Villeda H, Fang Z, Morgante M, Landewe T, Fengler K, Useche F, Hanafey M, Tingey S, Chou H, Wing R, Soderlund C, Coe EH Jr.

Plant Physiol. 2004 Apr;134(4):1317-26. Epub 2004 Mar 12.PMID: 15020742 [PubMed - indexed for MEDLINE]Related articlesFree article

A bacterial artificial chromosome based physical map of the Ustilago maydis genome.

Meksem K, Shultz J, Tebbji F, Jamai A, Henrich J, Kranz H, Arenz M, Schlueter T, Ishihara H, Jyothi LN, Zhang HB, Lightfoot DA.

Genome. 2005 Apr;48(2):207-16.PMID: 15838542 [PubMed - indexed for MEDLINE]Related articles

In silico comparison of transcript abundances during Arabidopsis thaliana and Glycine max resistance to Fusarium virguliforme.

Yuan J, Zhu M, Lightfoot DA, Iqbal MJ, Yang JY, Meksem K.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S6.PMID: 18831797 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat.

Devos KM, Ma J, Pontaroli AC, Pratt LH, Bennetzen JL.

Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19243-8. Epub 2005 Dec 15.PMID: 16357197 [PubMed - indexed for MEDLINE]Related articlesFree article

Soybean Genomics: Developments through the Use of Cultivar "Forrest".

Lightfoot DA.

Int J Plant Genomics. 2008;2008:793158.PMID: 18483614 [PubMed - in process]Related articlesFree article

Physical mapping of resistant and susceptible soybean genomes near the soybean cyst nematode resistance gene Rhg4.

Lewers KS, Nilmalgoda SD, Warner AL, Knap HT, Matthews BF.

Genome. 2001 Dec;44(6):1057-64.PMID: 11768209 [PubMed - indexed for MEDLINE]Related articles

A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance.

Tomkins JP, Mahalingam R, Smith H, Goicoechea JL, Knap HT, Wing RA.

Plant Mol Biol. 1999 Sep;41(1):25-32.PMID: 10561065 [PubMed - indexed for MEDLINE]Related articles

Genomic analysis of a region encompassing QRfs1 and QRfs2: genes that underlie soybean resistance to sudden death syndrome.

Triwitayakorn K, Njiti VN, Iqbal MJ, Yaegashi S, Town C, Lightfoot DA.

Genome. 2005 Feb;48(1):125-38.PMID: 15729404 [PubMed - indexed for MEDLINE]Related articles