PubMed

Gbrowse Moby: a Web-based browser for BioMoby Services.

Wilkinson M.

Source Code Biol Med. 2006 Oct 24;1:4.PMID: 17147784 [PubMed]Related articlesFree article

BioMoby extensions to the Taverna workflow management and enactment software.

Kawas E, Senger M, Wilkinson MD.

BMC Bioinformatics. 2006 Nov 30;7:523.PMID: 17137515 [PubMed - indexed for MEDLINE]Related articlesFree article

BioMOBY: an open source biological web services proposal.

Wilkinson MD, Links M.

Brief Bioinform. 2002 Dec;3(4):331-41.PMID: 12511062 [PubMed - indexed for MEDLINE]Related articlesFree article

BioMOBY successfully integrates distributed heterogeneous bioinformatics Web Services. The PlaNet exemplar case.

Wilkinson M, Schoof H, Ernst R, Haase D.

Plant Physiol. 2005 May;138(1):5-17.PMID: 15888673 [PubMed - indexed for MEDLINE]Related articlesFree article

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

BioMoby Consortium, Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A, Wang D, Gibbons F, Gordon PM, Sensen CW, Carrasco JM, Fernández JM, Shen L, Links M, Ng M, Opushneva N, Neerincx PB, Leunissen JA, Ernst R, Twigger S, Usadel B, Good B, Wong Y, Stein L, Crosby W, Karlsson J, Royo R, Párraga I, Ramírez S, Gelpi JL, Trelles O, Pisano DG, Jimenez N, Kerhornou A, Rosset R, Zamacola L, Tarraga J, Huerta-Cepas J, Carazo JM, Dopazo J, Guigo R, Navarro A, Orozco M, Valencia A, Claros MG, Pérez AJ, Aldana J, Rojano MM, Fernandez-Santa Cruz R, Navas I, Schiltz G, Farmer A, Gessler D, Schoof H, Groscurth A.

Brief Bioinform. 2008 May;9(3):220-31. Epub 2008 Jan 31. Review.PMID: 18238804 [PubMed - indexed for MEDLINE]Related articles

Seahawk: moving beyond HTML in Web-based bioinformatics analysis.

Gordon PM, Sensen CW.

BMC Bioinformatics. 2007 Jun 18;8:208.PMID: 17577405 [PubMed - indexed for MEDLINE]Related articlesFree article

Semantic Web Service provision: a realistic framework for Bioinformatics programmers.

Gordon PM, Trinh Q, Sensen CW.

Bioinformatics. 2007 May 1;23(9):1178-80. Epub 2007 Mar 24.PMID: 17384428 [PubMed - indexed for MEDLINE]Related articlesFree article

jORCA: easily integrating bioinformatics Web Services.

Martín-Requena V, Ríos J, García M, Ramírez S, Trelles O.

Bioinformatics. 2010 Feb 15;26(4):553-9. Epub 2010 Jan 3.PMID: 20047879 [PubMed - in process]Related articles

Biowep: a workflow enactment portal for bioinformatics applications.

Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S19.PMID: 17430563 [PubMed - indexed for MEDLINE]Related articlesFree article

Semi-automatic web service composition for the life sciences using the BioMoby semantic web framework.

DiBernardo M, Pottinger R, Wilkinson M.

J Biomed Inform. 2008 Oct;41(5):837-47. Epub 2008 Mar 4.PMID: 18373957 [PubMed - indexed for MEDLINE]Related articles

Moby and Moby 2: creatures of the deep (web).

Vandervalk BP, McCarthy EL, Wilkinson MD.

Brief Bioinform. 2009 Mar;10(2):114-28. Epub 2009 Jan 16.PMID: 19151099 [PubMed - indexed for MEDLINE]Related articles

DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs.

Song YC, Kawas E, Good BM, Wilkinson MD, Tebbutt SJ.

Bioinformatics. 2007 Mar 15;23(6):780-2. Epub 2007 Jan 18.PMID: 17237074 [PubMed - indexed for MEDLINE]Related articlesFree article

Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.

Li P, Castrillo JI, Velarde G, Wassink I, Soiland-Reyes S, Owen S, Withers D, Oinn T, Pocock MR, Goble CA, Oliver SG, Kell DB.

BMC Bioinformatics. 2008 Aug 7;9:334.PMID: 18687127 [PubMed - indexed for MEDLINE]Related articlesFree article

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.

Bare JC, Shannon PT, Schmid AK, Baliga NS.

BMC Bioinformatics. 2007 Nov 19;8:456.PMID: 18021453 [PubMed - indexed for MEDLINE]Related articlesFree article

Web services at the European Bioinformatics Institute-2009.

McWilliam H, Valentin F, Goujon M, Li W, Narayanasamy M, Martin J, Miyar T, Lopez R.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W6-10. Epub 2009 May 12.PMID: 19435877 [PubMed - indexed for MEDLINE]Related articlesFree article

Solutions for complex, multi data type and multi tool analysis: principles and applications of using workflow and pipelining methods.

Munro RE, Guo Y.

Methods Mol Biol. 2009;563:259-71.PMID: 19597790 [PubMed - indexed for MEDLINE]Related articles

WebGBrowse--a web server for GBrowse.

Podicheti R, Gollapudi R, Dong Q.

Bioinformatics. 2009 Jun 15;25(12):1550-1. Epub 2009 Apr 8.PMID: 19357095 [PubMed - indexed for MEDLINE]Related articles

GlycoExtractor: A Web-Based Interface for High Throughput Processing of HPLC-Glycan Data.

Artemenko NV, Campbell MP, Rudd PM.

J Proteome Res. 2010 Feb 26. [Epub ahead of print]PMID: 20143869 [PubMed - as supplied by publisher]Related articles

PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results.

He J, Dai X, Zhao X.

BMC Bioinformatics. 2007 Feb 9;8:53.PMID: 17291345 [PubMed - indexed for MEDLINE]Related articlesFree article

Using the Generic Genome Browser (GBrowse).

Donlin MJ.

Curr Protoc Bioinformatics. 2007 Mar;Chapter 9:Unit 9.9.PMID: 18428797 [PubMed - indexed for MEDLINE]Related articles