PubMed

EST-PAC a web package for EST annotation and protein sequence prediction.

Strahm Y, Powell D, Lefèvre C.

Source Code Biol Med. 2006 Oct 12;1:2.PMID: 17147782 [PubMed]Related articlesFree article

EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration.

Forment J, Gilabert F, Robles A, Conejero V, Nuez F, Blanca JM.

BMC Bioinformatics. 2008 Jan 7;9:5.PMID: 18179701 [PubMed - indexed for MEDLINE]Related articlesFree article

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180.PMID: 18400082 [PubMed - indexed for MEDLINE]Related articlesFree article

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

ESTIMA, a tool for EST management in a multi-project environment.

Kumar CG, LeDuc R, Gong G, Roinishivili L, Lewin HA, Liu L.

BMC Bioinformatics. 2004 Nov 4;5:176.PMID: 15527510 [PubMed - indexed for MEDLINE]Related articlesFree article

PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results.

He J, Dai X, Zhao X.

BMC Bioinformatics. 2007 Feb 9;8:53.PMID: 17291345 [PubMed - indexed for MEDLINE]Related articlesFree article

ESTuber db: an online database for Tuber borchii EST sequences.

Lazzari B, Caprera A, Cosentino C, Stella A, Milanesi L, Viotti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S13.PMID: 17430557 [PubMed - indexed for MEDLINE]Related articlesFree article

GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61.PMID: 19445732 [PubMed - indexed for MEDLINE]Related articlesFree article

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.PMID: 17123449 [PubMed - indexed for MEDLINE]Related articlesFree article

The Diatom EST Database.

Maheswari U, Montsant A, Goll J, Krishnasamy S, Rajyashri KR, Patell VM, Bowler C.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D344-7.PMID: 15608213 [PubMed - indexed for MEDLINE]Related articlesFree article

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.

Bioinformatics. 2007 Jul 1;23(13):i387-91.PMID: 17646321 [PubMed - indexed for MEDLINE]Related articlesFree article

ConiferEST: an integrated bioinformatics system for data reprocessing and mining of conifer expressed sequence tags (ESTs).

Liang C, Wang G, Liu L, Ji G, Fang L, Liu Y, Carter K, Webb JS, Dean JF.

BMC Genomics. 2007 May 29;8:134.PMID: 17535431 [PubMed - indexed for MEDLINE]Related articlesFree article

JESAM: CORBA software components to create and publish EST alignments and clusters.

Parsons JD, Rodriguez-Tomé P.

Bioinformatics. 2000 Apr;16(4):313-25.PMID: 10869029 [PubMed - indexed for MEDLINE]Related articlesFree article

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123.PMID: 19788737 [PubMed - indexed for MEDLINE]Related articlesFree article

PESTAS: a web server for EST analysis and sequence mining.

Nam SH, Kim DW, Jung TS, Choi YS, Kim DW, Choi HS, Choi SH, Park HS.

Bioinformatics. 2009 Jul 15;25(14):1846-8. Epub 2009 May 4.PMID: 19414531 [PubMed - indexed for MEDLINE]Related articles

ESTPiper--a web-based analysis pipeline for expressed sequence tags.

Tang Z, Choi JH, Hemmerich C, Sarangi A, Colbourne JK, Dong Q.

BMC Genomics. 2009 Apr 21;10:174.PMID: 19383159 [PubMed - indexed for MEDLINE]Related articlesFree article

ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequences.

Lee B, Hong T, Byun SJ, Woo T, Choi YJ.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W159-62. Epub 2007 May 25.PMID: 17526512 [PubMed - indexed for MEDLINE]Related articlesFree article

EST processing: from trace to sequence.

Schmid R, Blaxter M.

Methods Mol Biol. 2009;533:189-220.PMID: 19277557 [PubMed - indexed for MEDLINE]Related articles

ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database.

Kossenkov A, Manion FJ, Korotkov E, Moloshok TD, Ochs MF.

Bioinformatics. 2003 Mar 22;19(5):675-6.PMID: 12651736 [PubMed - indexed for MEDLINE]Related articlesFree article

In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches.

Nagaraj SH, Gasser RB, Nisbet AJ, Ranganathan S.

BMC Bioinformatics. 2008;9 Suppl 1:S10.PMID: 18315841 [PubMed - indexed for MEDLINE]Related articlesFree article