PubMed

BioMoby extensions to the Taverna workflow management and enactment software.

Kawas E, Senger M, Wilkinson MD.

BMC Bioinformatics. 2006 Nov 30;7:523.PMID: 17137515 [PubMed - indexed for MEDLINE]Related articlesFree article

Biowep: a workflow enactment portal for bioinformatics applications.

Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S19.PMID: 17430563 [PubMed - indexed for MEDLINE]Related articlesFree article

Taverna: a tool for the composition and enactment of bioinformatics workflows.

Oinn T, Addis M, Ferris J, Marvin D, Senger M, Greenwood M, Carver T, Glover K, Pocock MR, Wipat A, Li P.

Bioinformatics. 2004 Nov 22;20(17):3045-54. Epub 2004 Jun 16.PMID: 15201187 [PubMed - indexed for MEDLINE]Related articlesFree article

Gbrowse Moby: a Web-based browser for BioMoby Services.

Wilkinson M.

Source Code Biol Med. 2006 Oct 24;1:4.PMID: 17147784 [PubMed]Related articlesFree article

Evolution of web services in bioinformatics.

Neerincx PB, Leunissen JA.

Brief Bioinform. 2005 Jun;6(2):178-88. Review.PMID: 15975226 [PubMed - indexed for MEDLINE]Related articlesFree article

The Taverna Interaction Service: enabling manual interaction in workflows.

Lanzén A, Oinn T.

Bioinformatics. 2008 Apr 15;24(8):1118-20. Epub 2008 Mar 12.PMID: 18337261 [PubMed - indexed for MEDLINE]Related articlesFree article

BioMOBY: an open source biological web services proposal.

Wilkinson MD, Links M.

Brief Bioinform. 2002 Dec;3(4):331-41.PMID: 12511062 [PubMed - indexed for MEDLINE]Related articlesFree article

XQTav: an XQuery processor for Taverna environment.

Sroka J, Kaczor G, Tyszkiewicz J, Kierzek AM.

Bioinformatics. 2006 May 15;22(10):1280-1. Epub 2006 Mar 21.PMID: 16551662 [PubMed - indexed for MEDLINE]Related articlesFree article

Web services and workflow management for biological resources.

Romano P, Marra D, Milanesi L.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S24.PMID: 16351751 [PubMed - indexed for MEDLINE]Related articlesFree article

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

BioMoby Consortium, Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A, Wang D, Gibbons F, Gordon PM, Sensen CW, Carrasco JM, Fernández JM, Shen L, Links M, Ng M, Opushneva N, Neerincx PB, Leunissen JA, Ernst R, Twigger S, Usadel B, Good B, Wong Y, Stein L, Crosby W, Karlsson J, Royo R, Párraga I, Ramírez S, Gelpi JL, Trelles O, Pisano DG, Jimenez N, Kerhornou A, Rosset R, Zamacola L, Tarraga J, Huerta-Cepas J, Carazo JM, Dopazo J, Guigo R, Navarro A, Orozco M, Valencia A, Claros MG, Pérez AJ, Aldana J, Rojano MM, Fernandez-Santa Cruz R, Navas I, Schiltz G, Farmer A, Gessler D, Schoof H, Groscurth A.

Brief Bioinform. 2008 May;9(3):220-31. Epub 2008 Jan 31. Review.PMID: 18238804 [PubMed - indexed for MEDLINE]Related articles

DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs.

Song YC, Kawas E, Good BM, Wilkinson MD, Tebbutt SJ.

Bioinformatics. 2007 Mar 15;23(6):780-2. Epub 2007 Jan 18.PMID: 17237074 [PubMed - indexed for MEDLINE]Related articlesFree article

Automated manipulation of systems biology models using libSBML within Taverna workflows.

Li P, Oinn T, Soiland S, Kell DB.

Bioinformatics. 2008 Jan 15;24(2):287-9. Epub 2007 Dec 1.PMID: 18056069 [PubMed - indexed for MEDLINE]Related articlesFree article

Constructing computational pipelines.

Halling-Brown M, Shepherd AJ.

Methods Mol Biol. 2008;453:451-70.PMID: 18712319 [PubMed - indexed for MEDLINE]Related articles

BioMOBY successfully integrates distributed heterogeneous bioinformatics Web Services. The PlaNet exemplar case.

Wilkinson M, Schoof H, Ernst R, Haase D.

Plant Physiol. 2005 May;138(1):5-17.PMID: 15888673 [PubMed - indexed for MEDLINE]Related articlesFree article

Semantic Web Service provision: a realistic framework for Bioinformatics programmers.

Gordon PM, Trinh Q, Sensen CW.

Bioinformatics. 2007 May 1;23(9):1178-80. Epub 2007 Mar 24.PMID: 17384428 [PubMed - indexed for MEDLINE]Related articlesFree article

BioWMS: a web-based Workflow Management System for bioinformatics.

Bartocci E, Corradini F, Merelli E, Scortichini L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S2.PMID: 17430564 [PubMed - indexed for MEDLINE]Related articlesFree article

Integrating ARC grid middleware with Taverna workflows.

Krabbenhöft HN, Möller S, Bayer D.

Bioinformatics. 2008 May 1;24(9):1221-2. Epub 2008 Mar 19.PMID: 18353787 [PubMed - indexed for MEDLINE]Related articlesFree article

REMORA: a pilot in the ocean of BioMoby web-services.

Carrere S, Gouzy J.

Bioinformatics. 2006 Apr 1;22(7):900-1. Epub 2006 Jan 19.PMID: 16423924 [PubMed - indexed for MEDLINE]Related articlesFree article

myGrid: personalised bioinformatics on the information grid.

Stevens RD, Robinson AJ, Goble CA.

Bioinformatics. 2003;19 Suppl 1:i302-4.PMID: 12855473 [PubMed - indexed for MEDLINE]Related articlesFree article

Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.

Li P, Castrillo JI, Velarde G, Wassink I, Soiland-Reyes S, Owen S, Withers D, Oinn T, Pocock MR, Goble CA, Oliver SG, Kell DB.

BMC Bioinformatics. 2008 Aug 7;9:334.PMID: 18687127 [PubMed - indexed for MEDLINE]Related articlesFree article