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    Results: 1 to 20 of 316

    1.

    xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features.

    Schlueter SD, Wilkerson MD, Dong Q, Brendel V.

    Genome Biol. 2006;7(11):R111.

    PMID:
    17116260
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets.

    Nicol JW, Helt GA, Blanchard SG Jr, Raja A, Loraine AE.

    Bioinformatics. 2009 Oct 15;25(20):2730-1. Epub 2009 Aug 4.

    PMID:
    19654113
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    MaizeGDB.

    Lawrence CJ.

    Methods Mol Biol. 2007;406:331-45.

    PMID:
    18287701
    [PubMed - indexed for MEDLINE]
    4.

    MIPS plant genome information resources.

    Spannagl M, Haberer G, Ernst R, Schoof H, Mayer KF.

    Methods Mol Biol. 2007;406:137-59.

    PMID:
    18287691
    [PubMed - indexed for MEDLINE]
    5.

    PlantGDB: a resource for comparative plant genomics.

    Duvick J, Fu A, Muppirala U, Sabharwal M, Wilkerson MD, Lawrence CJ, Lushbough C, Brendel V.

    Nucleic Acids Res. 2008 Jan;36(Database issue):D959-65. Epub 2007 Dec 6.

    PMID:
    18063570
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    AtEnsEMBL.

    James N, Graham N, Clements D, Schildknecht B, May S.

    Methods Mol Biol. 2007;406:213-27.

    PMID:
    18287694
    [PubMed - indexed for MEDLINE]
    7.

    GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics.

    Samson D, Legeai F, Karsenty E, Reboux S, Veyrieras JB, Just J, Barillot E.

    Nucleic Acids Res. 2003 Jan 1;31(1):179-82.

    PMID:
    12519976
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    BASC: an integrated bioinformatics system for Brassica research.

    Erwin TA, Jewell EG, Love CG, Lim GA, Li X, Chapman R, Batley J, Stajich JE, Mongin E, Stupka E, Ross B, Spangenberg G, Edwards D.

    Nucleic Acids Res. 2007 Jan;35(Database issue):D870-3. Epub 2006 Dec 5.

    PMID:
    17148473
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    MASiVE: Mapping and Analysis of Sirevirus Elements in plant genome sequences.

    Darzentas N, Bousios A, Apostolidou V, Tsaftaris AS.

    Bioinformatics. 2010 Oct 1;26(19):2452-4. Epub 2010 Aug 9.

    PMID:
    20696734
    [PubMed - indexed for MEDLINE]
    Free Article
    10.

    DiProGB: the dinucleotide properties genome browser.

    Friedel M, Nikolajewa S, Sühnel J, Wilhelm T.

    Bioinformatics. 2009 Oct 1;25(19):2603-4. Epub 2009 Jul 15.

    PMID:
    19605418
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Genomics made easier: an introductory tutorial to genome datamining.

    Schattner P.

    Genomics. 2009 Mar;93(3):187-95. Epub 2008 Dec 5.

    PMID:
    19041391
    [PubMed - indexed for MEDLINE]
    12.

    Ensembl 2004.

    Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V, Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T.

    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D468-70.

    PMID:
    14681459
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    UCSC genome browser tutorial.

    Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ.

    Genomics. 2008 Aug;92(2):75-84. Epub 2008 Jun 2. Review.

    PMID:
    18514479
    [PubMed - indexed for MEDLINE]
    14.

    JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

    Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

    BMC Bioinformatics. 2006 Nov 23;7:513.

    PMID:
    17123449
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Comparative map and trait viewer (CMTV): an integrated bioinformatic tool to construct consensus maps and compare QTL and functional genomics data across genomes and experiments.

    Sawkins MC, Farmer AD, Hoisington D, Sullivan J, Tolopko A, Jiang Z, Ribaut JM.

    Plant Mol Biol. 2004 Oct;56(3):465-80.

    PMID:
    15604756
    [PubMed - indexed for MEDLINE]
    17.

    AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context.

    Martin O, Valsesia A, Telenti A, Xenarios I, Stevenson BJ.

    Bioinformatics. 2009 Mar 1;25(5):662-3. Epub 2009 Jan 25.

    PMID:
    19168913
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    A clustering method for repeat analysis in DNA sequences.

    Volfovsky N, Haas BJ, Salzberg SL.

    Genome Biol. 2001;2(8):RESEARCH0027. Epub 2001 Aug 1.

    PMID:
    11532211
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    GeneBins: a database for classifying gene expression data, with application to plant genome arrays.

    Goffard N, Weiller G.

    BMC Bioinformatics. 2007 Mar 12;8:87.

    PMID:
    17349060
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    The UCSC genome browser: what every molecular biologist should know.

    Mangan ME, Williams JM, Kuhn RM, Lathe WC 3rd.

    Curr Protoc Mol Biol. 2009 Oct;Chapter 19:Unit19.9. Review.

    PMID:
    19816931
    [PubMed - indexed for MEDLINE]

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