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    Results: 1 to 20 of 294

    1.

    Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans.

    David H, Hofmann G, Oliveira AP, Jarmer H, Nielsen J.

    Genome Biol. 2006;7(11):R108.

    PMID:
    17107606
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Analysis of Aspergillus nidulans metabolism at the genome-scale.

    David H, Ozçelik IS, Hofmann G, Nielsen J.

    BMC Genomics. 2008 Apr 11;9:163.

    PMID:
    18405346
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis.

    Salazar M, Vongsangnak W, Panagiotou G, Andersen MR, Nielsen J.

    Mol Genet Genomics. 2009 Dec;282(6):571-86. Epub 2009 Sep 26.

    PMID:
    19784673
    [PubMed - indexed for MEDLINE]
    4.

    Global gene expression analysis of Aspergillus nidulans reveals metabolic shift and transcription suppression under hypoxia.

    Masuo S, Terabayashi Y, Shimizu M, Fujii T, Kitazume T, Takaya N.

    Mol Genet Genomics. 2010 Dec;284(6):415-24. Epub 2010 Sep 28.

    PMID:
    20878186
    [PubMed - indexed for MEDLINE]
    5.

    Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae.

    Cakir T, Kirdar B, Onsan ZI, Ulgen KO, Nielsen J.

    BMC Syst Biol. 2007 Mar 27;1:18.

    PMID:
    17408508
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Biodiversity and evolution of primary carbon metabolism in Aspergillus nidulans and other Aspergillus spp.

    Flipphi M, Sun J, Robellet X, Karaffa L, Fekete E, Zeng AP, Kubiecek CP.

    Fungal Genet Biol. 2009 Mar;46 Suppl 1:S19-S44.

    PMID:
    19610199
    [PubMed - indexed for MEDLINE]
    7.

    Systems analysis unfolds the relationship between the phosphoketolase pathway and growth in Aspergillus nidulans.

    Panagiotou G, Andersen MR, Grotkjaer T, Regueira TB, Hofmann G, Nielsen J, Olsson L.

    PLoS One. 2008;3(12):e3847. Epub 2008 Dec 4.

    PMID:
    19052639
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Transcription analysis using high-density micro-arrays of Aspergillus nidulans wild-type and creA mutant during growth on glucose or ethanol.

    Mogensen J, Nielsen HB, Hofmann G, Nielsen J.

    Fungal Genet Biol. 2006 Aug;43(8):593-603. Epub 2006 May 15.

    PMID:
    16698295
    [PubMed - indexed for MEDLINE]
    9.

    Use of expressed sequence tag analysis and cDNA microarrays of the filamentous fungus Aspergillus nidulans.

    Sims AH, Robson GD, Hoyle DC, Oliver SG, Turner G, Prade RA, Russell HH, Dunn-Coleman NS, Gent ME.

    Fungal Genet Biol. 2004 Feb;41(2):199-212.

    PMID:
    14732266
    [PubMed - indexed for MEDLINE]
    10.

    Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

    Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Baştürkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, D'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Peñalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW.

    Nature. 2005 Dec 22;438(7071):1105-15.

    PMID:
    16372000
    [PubMed - indexed for MEDLINE]
    11.

    CreA influences the metabolic fluxes of Aspergillus nidulans during growth on glucose and xylose.

    David H, Krogh AM, Roca C, Akesson M, Nielsen J.

    Microbiology. 2005 Jul;151(Pt 7):2209-21.

    PMID:
    16000711
    [PubMed - indexed for MEDLINE]
    Free Article
    12.

    Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli.

    Gutierrez-Ríos RM, Freyre-Gonzalez JA, Resendis O, Collado-Vides J, Saier M, Gosset G.

    BMC Microbiol. 2007 Jun 8;7:53.

    PMID:
    17559662
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Functional analysis of alcS, a gene of the alc cluster in Aspergillus nidulans.

    Flipphi M, Robellet X, Dequier E, Leschelle X, Felenbok B, Vélot C.

    Fungal Genet Biol. 2006 Apr;43(4):247-60. Epub 2006 Mar 13.

    PMID:
    16531087
    [PubMed - indexed for MEDLINE]
    14.

    Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae.

    Vongsangnak W, Olsen P, Hansen K, Krogsgaard S, Nielsen J.

    BMC Genomics. 2008 May 23;9:245.

    PMID:
    18500999
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Molecular regulation of penicillin biosynthesis in Aspergillus (Emericella) nidulans.

    Brakhage AA.

    FEMS Microbiol Lett. 1997 Mar 1;148(1):1-10. Review.

    PMID:
    9066103
    [PubMed - indexed for MEDLINE]
    16.

    Studies of the production of fungal polyketides in Aspergillus nidulans by using systems biology tools.

    Panagiotou G, Andersen MR, Grotkjaer T, Regueira TB, Nielsen J, Olsson L.

    Appl Environ Microbiol. 2009 Apr;75(7):2212-20. Epub 2009 Jan 23.

    PMID:
    19168657
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger.

    Andersen MR, Nielsen ML, Nielsen J.

    Mol Syst Biol. 2008;4:178. Epub 2008 Mar 25.

    PMID:
    18364712
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    ATP-citrate lyase is required for production of cytosolic acetyl coenzyme A and development in Aspergillus nidulans.

    Hynes MJ, Murray SL.

    Eukaryot Cell. 2010 Jul;9(7):1039-48. Epub 2010 May 21.

    PMID:
    20495057
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Regulatory genes controlling fatty acid catabolism and peroxisomal functions in the filamentous fungus Aspergillus nidulans.

    Hynes MJ, Murray SL, Duncan A, Khew GS, Davis MA.

    Eukaryot Cell. 2006 May;5(5):794-805.

    PMID:
    16682457
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Transcriptional control of gluconeogenesis in Aspergillus nidulans.

    Hynes MJ, Szewczyk E, Murray SL, Suzuki Y, Davis MA, Sealy-Lewis HM.

    Genetics. 2007 May;176(1):139-50. Epub 2007 Mar 4.

    PMID:
    17339216
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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