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Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction.
Lei Z, Dai Y.
BMC Bioinformatics. 2006 Nov 7;7:491.PMID: 17090318 [PubMed - indexed for MEDLINE]Related articlesFree article
An SVM-based system for predicting protein subnuclear localizations.
BMC Bioinformatics. 2005 Dec 7;6:291.PMID: 16336650 [PubMed - indexed for MEDLINE]Related articlesFree article
ProLoc-GO: utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization.
Huang WL, Tung CW, Ho SW, Hwang SF, Ho SY.
BMC Bioinformatics. 2008 Feb 1;9:80.PMID: 18241343 [PubMed - indexed for MEDLINE]Related articlesFree article
Prediction of protein subcellular localization.
Yu CS, Chen YC, Lu CH, Hwang JK.
Proteins. 2006 Aug 15;64(3):643-51.PMID: 16752418 [PubMed - indexed for MEDLINE]Related articles
AVID: an integrative framework for discovering functional relationships among proteins.
Jiang T, Keating AE.
BMC Bioinformatics. 2005 Jun 1;6:136.PMID: 15929793 [PubMed - indexed for MEDLINE]Related articlesFree article
SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.
Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.
BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.PMID: 17570145 [PubMed - indexed for MEDLINE]Related articlesFree article
Incorporating functional inter-relationships into protein function prediction algorithms.
Pandey G, Myers CL, Kumar V.
BMC Bioinformatics. 2009 May 12;10:142.PMID: 19435516 [PubMed - indexed for MEDLINE]Related articlesFree article
Predicting protein subnuclear localization using GO-amino-acid composition features.
Huang WL, Tung CW, Huang HL, Ho SY.
Biosystems. 2009 Nov;98(2):73-9. Epub 2009 Jul 5.PMID: 19583993 [PubMed - in process]Related articles
Predicting gene ontology functions from protein's regional surface structures.
Liu ZP, Wu LY, Wang Y, Chen L, Zhang XS.
BMC Bioinformatics. 2007 Dec 11;8:475.PMID: 18070366 [PubMed - indexed for MEDLINE]Related articlesFree article
Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.
Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.
BMC Microbiol. 2009 Feb 19;9 Suppl 1:S8. Review.PMID: 19278556 [PubMed - indexed for MEDLINE]Related articlesFree article
Protein subcellular localization prediction based on compartment-specific biological features.
Su CY, Lo A, Chiu HS, Sung TY, Hsu WL.
Comput Syst Bioinformatics Conf. 2006:325-30.PMID: 17369650 [PubMed - indexed for MEDLINE]Related articlesFree article
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.
Ferragina P, Giancarlo R, Greco V, Manzini G, Valiente G.
BMC Bioinformatics. 2007 Jul 13;8:252.PMID: 17629909 [PubMed - indexed for MEDLINE]Related articlesFree article
Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization.
Chou KC, Shen HB.
Biochem Biophys Res Commun. 2006 Aug 18;347(1):150-7. Epub 2006 Jun 21. Erratum in: Biochem Biophys Res Commun. 2006 Oct 6;348(4):1479. PMID: 16808903 [PubMed - indexed for MEDLINE]Related articles
ProLoc: prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features.
Huang WL, Tung CW, Huang HL, Hwang SF, Ho SY.
Biosystems. 2007 Sep-Oct;90(2):573-81. Epub 2007 Jan 4.PMID: 17291684 [PubMed - indexed for MEDLINE]Related articles
A regression-based K nearest neighbor algorithm for gene function prediction from heterogeneous data.
Yao Z, Ruzzo WL.
BMC Bioinformatics. 2006 Mar 20;7 Suppl 1:S11.PMID: 16723004 [PubMed - indexed for MEDLINE]Related articlesFree article
PSSM-based prediction of DNA binding sites in proteins.
Ahmad S, Sarai A.
BMC Bioinformatics. 2005 Feb 19;6:33.PMID: 15720719 [PubMed - indexed for MEDLINE]Related articlesFree article
ESG: extended similarity group method for automated protein function prediction.
Chitale M, Hawkins T, Park C, Kihara D.
Bioinformatics. 2009 Jul 15;25(14):1739-45. Epub 2009 May 12.PMID: 19435743 [PubMed - indexed for MEDLINE]Related articles
Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition.
Tamura T, Akutsu T.
BMC Bioinformatics. 2007 Nov 30;8:466.PMID: 18047679 [PubMed - indexed for MEDLINE]Related articlesFree article
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.
Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.
BMC Bioinformatics. 2008 Jan 25;9:52.PMID: 18221520 [PubMed - indexed for MEDLINE]Related articlesFree article
Computational identification of ubiquitylation sites from protein sequences.
Tung CW, Ho SY.
BMC Bioinformatics. 2008 Jul 15;9:310.PMID: 18625080 [PubMed - indexed for MEDLINE]Related articlesFree article
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