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    Results: 1 to 20 of 159

    1.

    A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

    Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ Jr, White J, Whetzel PL, Wymore F, Parkinson H, Sarkans U, Ball CA, Brazma A.

    BMC Bioinformatics. 2006 Nov 6;7:489.PMID: 17087822 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    A software framework for microarray and gene expression object model (MAGE-OM) array design annotation.

    Qureshi M, Ivens A.

    BMC Genomics. 2008 Mar 20;9:133.PMID: 18366695 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB.

    Rayner TF, Rezwan FI, Lukk M, Bradley XZ, Farne A, Holloway E, Malone J, Williams E, Parkinson H.

    Bioinformatics. 2009 Jan 15;25(2):279-80. Epub 2008 Nov 27.PMID: 19038988 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    MGED standards: work in progress.

    Ball CA, Brazma A.

    OMICS. 2006 Summer;10(2):138-44. Review.PMID: 16901218 [PubMed - indexed for MEDLINE]Related articles

    5.

    The MGED Ontology: a resource for semantics-based description of microarray experiments.

    Whetzel PL, Parkinson H, Causton HC, Fan L, Fostel J, Fragoso G, Game L, Heiskanen M, Morrison N, Rocca-Serra P, Sansone SA, Taylor C, White J, Stoeckert CJ Jr.

    Bioinformatics. 2006 Apr 1;22(7):866-73. Epub 2006 Jan 21.PMID: 16428806 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Design and implementation of microarray gene expression markup language (MAGE-ML).

    Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A.

    Genome Biol. 2002 Aug 23;3(9):RESEARCH0046. Epub 2002 Aug 23.PMID: 12225585 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data.

    Dondrup M, Albaum SP, Griebel T, Henckel K, Jünemann S, Kahlke T, Kleindt CK, Küster H, Linke B, Mertens D, Mittard-Runte V, Neuweger H, Runte KJ, Tauch A, Tille F, Pühler A, Goesmann A.

    BMC Bioinformatics. 2009 Feb 6;10:50.PMID: 19200358 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress.

    Mukherjee G, Abeygunawardena N, Parkinson H, Contrino S, Durinck S, Farne A, Holloway E, Lilja P, Moreau Y, Oezcimen A, Rayner T, Sharma A, Brazma A, Sarkans U, Shojatalab M.

    Plant Physiol. 2005 Oct;139(2):632-6.PMID: 16219923 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    ArrayExpress--a public repository for microarray gene expression data at the EBI.

    Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, Abeygunawardena N, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Rocca-Serra P, Sansone SA.

    Nucleic Acids Res. 2003 Jan 1;31(1):68-71.PMID: 12519949 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    ArrayExpress--a public database of microarray experiments and gene expression profiles.

    Parkinson H, Kapushesky M, Shojatalab M, Abeygunawardena N, Coulson R, Farne A, Holloway E, Kolesnykov N, Lilja P, Lukk M, Mani R, Rayner T, Sharma A, William E, Sarkans U, Brazma A.

    Nucleic Acids Res. 2007 Jan;35(Database issue):D747-50. Epub 2006 Nov 28.PMID: 17132828 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data.

    Navarange M, Game L, Fowler D, Wadekar V, Banks H, Cooley N, Rahman F, Hinshelwood J, Broderick P, Causton HC.

    BMC Bioinformatics. 2005 Nov 9;6:268.PMID: 16280078 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    SDRF2GRAPH: a visualization tool of a spreadsheet-based description of experimental processes.

    Kawaji H, Hayashizaki Y, Daub CO.

    BMC Bioinformatics. 2009 May 7;10:133.PMID: 19422683 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    MicroGen: a MIAME compliant web system for microarray experiment information and workflow management.

    Burgarella S, Cattaneo D, Pinciroli F, Masseroli M.

    BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S6.PMID: 16351755 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

    Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M.

    Nat Genet. 2001 Dec;29(4):365-71.PMID: 11726920 [PubMed - indexed for MEDLINE]Related articles

    15.

    MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies.

    Honoré P, Granjeaud S, Tagett R, Deraco S, Beaudoing E, Rougemont J, Debono S, Hingamp P.

    BMC Genomics. 2006 Sep 20;7:240.PMID: 16987406 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    The tissue microarray data exchange specification: a community-based, open source tool for sharing tissue microarray data.

    Berman JJ, Edgerton ME, Friedman BA.

    BMC Med Inform Decis Mak. 2003 May 23;3:5. Epub 2003 May 23.PMID: 12769826 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    ArrayExpress: a public database of gene expression data at EBI.

    Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M, Contrino S, Vilo J, Abeygunawardena N, Mukherjee G, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Sansone SA.

    C R Biol. 2003 Oct-Nov;326(10-11):1075-8.PMID: 14744115 [PubMed - indexed for MEDLINE]Related articles

    18.

    The Stanford Microarray Database accommodates additional microarray platforms and data formats.

    Ball CA, Awad IA, Demeter J, Gollub J, Hebert JM, Hernandez-Boussard T, Jin H, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G.

    Nucleic Acids Res. 2005 Jan 1;33(Database issue):D580-2.PMID: 15608265 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    The XBabelPhish MAGE-ML and XML translator.

    Maier D, Wymore F, Sherlock G, Ball CA.

    BMC Bioinformatics. 2008 Jan 18;9:28.PMID: 18205924 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    A web services choreography scenario for interoperating bioinformatics applications.

    de Knikker R, Guo Y, Li JL, Kwan AK, Yip KY, Cheung DW, Cheung KH.

    BMC Bioinformatics. 2004 Mar 10;5:25.PMID: 15113410 [PubMed - indexed for MEDLINE]Related articlesFree article

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