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    Results: 1 to 20 of 417

    1.

    A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database.

    Katz S, Irizarry RA, Lin X, Tripputi M, Porter MW.

    BMC Bioinformatics. 2006 Oct 23;7:464.PMID: 17059591 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Tissue-specific RMA models to incrementally normalize Affymetrix GeneChip data.

    Eschrich SA, Hoerter AM, Bloom GC, Fenstermacher DA.

    Conf Proc IEEE Eng Med Biol Soc. 2008;2008:2419-22.PMID: 19163190 [PubMed - indexed for MEDLINE]Related articles

    3.

    Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.

    Datta S, Datta S.

    BMC Bioinformatics. 2006 Aug 31;7:397.PMID: 16945146 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays.

    Ge H, Cheng C, Li LM.

    BMC Bioinformatics. 2008 Apr 14;9:194.PMID: 18410691 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Empirical Bayes models for multiple probe type microarrays at the probe level.

    Astrand M, Mostad P, Rudemo M.

    BMC Bioinformatics. 2008 Mar 20;9:156.PMID: 18366694 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

    Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.

    BMC Bioinformatics. 2007 Apr 20;8:132.PMID: 17448222 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Utilization of two sample t-test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies.

    Hu Z, Willsky GR.

    BMC Bioinformatics. 2006 Jan 10;7:12.PMID: 16403228 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

    Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

    Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.PMID: 15117752 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies.

    Verhaak RG, Staal FJ, Valk PJ, Lowenberg B, Reinders MJ, de Ridder D.

    BMC Bioinformatics. 2006 Mar 2;7:105.PMID: 16512908 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    affy--analysis of Affymetrix GeneChip data at the probe level.

    Gautier L, Cope L, Bolstad BM, Irizarry RA.

    Bioinformatics. 2004 Feb 12;20(3):307-15.PMID: 14960456 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Dynamic variable selection in SNP genotype autocalling from APEX microarray data.

    Podder M, Welch WJ, Zamar RH, Tebbutt SJ.

    BMC Bioinformatics. 2006 Nov 30;7:521.PMID: 17137502 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

    Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP.

    Biostatistics. 2003 Apr;4(2):249-64.PMID: 12925520 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    A Distribution-Free Convolution Model for background correction of oligonucleotide microarray data.

    Chen Z, McGee M, Liu Q, Kong M, Deng Y, Scheuermann RH.

    BMC Genomics. 2009 Jul 7;10 Suppl 1:S19.PMID: 19594878 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    A new summarization method for Affymetrix probe level data.

    Hochreiter S, Clevert DA, Obermayer K.

    Bioinformatics. 2006 Apr 15;22(8):943-9. Epub 2006 Feb 10.PMID: 16473874 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Combining gene expression data from different generations of oligonucleotide arrays.

    Hwang KB, Kong SW, Greenberg SA, Park PJ.

    BMC Bioinformatics. 2004 Oct 25;5:159.PMID: 15504239 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

    Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M.

    Bioinformatics. 2006 Dec 15;22(24):3016-24. Epub 2006 Oct 12.PMID: 17038339 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    A benchmark for Affymetrix GeneChip expression measures.

    Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP.

    Bioinformatics. 2004 Feb 12;20(3):323-31.PMID: 14960458 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    A statistical method for predicting splice variants between two groups of samples using GeneChip expression array data.

    Fan W, Khalid N, Hallahan AR, Olson JM, Zhao LP.

    Theor Biol Med Model. 2006 Apr 7;3:19.PMID: 16603076 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Correlation test to assess low-level processing of high-density oligonucleotide microarray data.

    Ploner A, Miller LD, Hall P, Bergh J, Pawitan Y.

    BMC Bioinformatics. 2005 Mar 31;6:80.PMID: 15799785 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.

    Liu H, Zeeberg BR, Qu G, Koru AG, Ferrucci A, Kahn A, Ryan MC, Nuhanovic A, Munson PJ, Reinhold WC, Kane DW, Weinstein JN.

    Bioinformatics. 2007 Sep 15;23(18):2385-90. Epub 2007 Jul 27.PMID: 17660211 [PubMed - indexed for MEDLINE]Related articlesFree article

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