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    Results: 1 to 20 of 119

    1.

    Computing distribution of scale independent motifs in biological sequences.

    Almeida JS, Vinga S.

    Algorithms Mol Biol. 2006 Oct 18;1:18.PMID: 17049089 [PubMed]Related articlesFree article

    2.

    Universal sequence map (USM) of arbitrary discrete sequences.

    Almeida JS, Vinga S.

    BMC Bioinformatics. 2002;3:6. Epub 2002 Feb 5.PMID: 11895567 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Local Renyi entropic profiles of DNA sequences.

    Vinga S, Almeida JS.

    BMC Bioinformatics. 2007 Oct 16;8:393.PMID: 17939871 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Biological sequences as pictures: a generic two dimensional solution for iterated maps.

    Almeida JS, Vinga S.

    BMC Bioinformatics. 2009 Mar 31;10:100.PMID: 19335894 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Analysis of genomic sequences by Chaos Game Representation.

    Almeida JS, Carriço JA, Maretzek A, Noble PA, Fletcher M.

    Bioinformatics. 2001 May;17(5):429-37.PMID: 11331237 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Efficient Boolean implementation of universal sequence maps (bUSM).

    Schwacke J, Almeida JS.

    BMC Bioinformatics. 2002 Oct 21;3:28.PMID: 12387731 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.

    Ferragina P, Giancarlo R, Greco V, Manzini G, Valiente G.

    BMC Bioinformatics. 2007 Jul 13;8:252.PMID: 17629909 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    [Multifractal analysis of genomes sequences' CGR graph]

    Fu W, Wang Y, Lu D.

    Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2007 Jun;24(3):522-5. Chinese. PMID: 17713253 [PubMed - indexed for MEDLINE]Related articles

    9.

    A web server for interactive and zoomable Chaos Game Representation images.

    Arakawa K, Oshita K, Tomita M.

    Source Code Biol Med. 2009 Sep 17;4:6.PMID: 19761591 [PubMed - in process]Related articlesFree article

    10.

    Multifractal Analysis of Genomic Sequences CGR Images.

    Fu W, Wang Y, Lu D.

    Conf Proc IEEE Eng Med Biol Soc. 2005;5:4783-6.PMID: 17281311 [PubMed - in process]Related articles

    11.

    Chaos game representation of human pallidal spike trains.

    Rasouli M, Rasouli G, Lenz FA, Borrett DS, Verhagen L, Kwan HC.

    J Biol Phys. 2009 Aug 18. [Epub ahead of print]PMID: 19688266 [PubMed - as supplied by publisher]Related articles

    12.

    Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses.

    Yu ZG, Anh V, Lau KS.

    J Theor Biol. 2004 Feb 7;226(3):341-8.PMID: 14643648 [PubMed - indexed for MEDLINE]Related articles

    13.

    ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family.

    Roca AI, Almada AE, Abajian AC.

    BMC Bioinformatics. 2008 Dec 22;9:554.PMID: 19102758 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Test on the structure of biological sequences via Chaos Game Representation.

    Cénac P.

    Stat Appl Genet Mol Biol. 2005;4:Article27. Epub 2005 Sep 21.PMID: 16646845 [PubMed]Related articlesFree article

    15.

    Stem kernels for RNA sequence analyses.

    Sakakibara Y, Popendorf K, Ogawa N, Asai K, Sato K.

    J Bioinform Comput Biol. 2007 Oct;5(5):1103-22.PMID: 17933013 [PubMed - indexed for MEDLINE]Related articles

    16.

    PFAAT version 2.0: a tool for editing, annotating, and analyzing multiple sequence alignments.

    Caffrey DR, Dana PH, Mathur V, Ocano M, Hong EJ, Wang YE, Somaroo S, Caffrey BE, Potluri S, Huang ES.

    BMC Bioinformatics. 2007 Oct 11;8:381.PMID: 17931421 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

    Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

    BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.PMID: 17570145 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Faster exact Markovian probability functions for motif occurrences: a DFA-only approach.

    Ribeca P, Raineri E.

    Bioinformatics. 2008 Dec 15;24(24):2839-48. Epub 2008 Oct 9.PMID: 18845582 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Rényi continuous entropy of DNA sequences.

    Vinga S, Almeida JS.

    J Theor Biol. 2004 Dec 7;231(3):377-88.PMID: 15501469 [PubMed - indexed for MEDLINE]Related articles

    20.

    Sequence representation and prediction of protein secondary structure for structural motifs in twilight zone proteins.

    Kurgan L, Kedarisetti KD.

    Protein J. 2006 Dec;25(7-8):463-74.PMID: 17115254 [PubMed - indexed for MEDLINE]Related articles

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