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    Results: 1 to 20 of 237

    1.

    Building multiclass classifiers for remote homology detection and fold recognition.

    Rangwala H, Karypis G.

    BMC Bioinformatics. 2006 Oct 16;7:455.PMID: 17042943 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

    Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

    BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.PMID: 17570145 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Profile-based string kernels for remote homology detection and motif extraction.

    Kuang R, Ie E, Wang K, Wang K, Siddiqi M, Freund Y, Leslie C.

    J Bioinform Comput Biol. 2005 Jun;3(3):527-50.PMID: 16108083 [PubMed - indexed for MEDLINE]Related articles

    4.

    Profile-based direct kernels for remote homology detection and fold recognition.

    Rangwala H, Karypis G.

    Bioinformatics. 2005 Dec 1;21(23):4239-47. Epub 2005 Sep 27.PMID: 16188929 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection.

    Jung I, Lee J, Lee SY, Kim D.

    BMC Bioinformatics. 2008 Jul 1;9:298.PMID: 18590572 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis.

    Liu B, Wang X, Lin L, Dong Q, Wang X.

    BMC Bioinformatics. 2008 Dec 1;9:510.PMID: 19046430 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Hierarchical learning architecture with automatic feature selection for multiclass protein fold classification.

    Huang CD, Lin CT, Pal NR.

    IEEE Trans Nanobioscience. 2003 Dec;2(4):221-32.PMID: 15376912 [PubMed - indexed for MEDLINE]Related articles

    8.

    Application of latent semantic analysis to protein remote homology detection.

    Dong QW, Wang XL, Lin L.

    Bioinformatics. 2006 Feb 1;22(3):285-90. Epub 2005 Nov 29.PMID: 16317074 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Profile-based string kernels for remote homology detection and motif extraction.

    Kuang R, Ie E, Wang K, Wang K, Siddiqi M, Freund Y, Leslie C.

    Proc IEEE Comput Syst Bioinform Conf. 2004:152-60.PMID: 16448009 [PubMed - indexed for MEDLINE]Related articles

    10.

    Improved protein secondary structure prediction using support vector machine with a new encoding scheme and an advanced tertiary classifier.

    Hu HJ, Pan Y, Harrison R, Tai PC.

    IEEE Trans Nanobioscience. 2004 Dec;3(4):265-71.PMID: 15631138 [PubMed - indexed for MEDLINE]Related articles

    11.

    Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection.

    Damoulas T, Girolami MA.

    Bioinformatics. 2008 May 15;24(10):1264-70. Epub 2008 Mar 31.PMID: 18378524 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Mismatch string kernels for discriminative protein classification.

    Leslie CS, Eskin E, Cohen A, Weston J, Noble WS.

    Bioinformatics. 2004 Mar 1;20(4):467-76. Epub 2004 Jan 22.PMID: 14990442 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Fast model-based protein homology detection without alignment.

    Hochreiter S, Heusel M, Obermayer K.

    Bioinformatics. 2007 Jul 15;23(14):1728-36. Epub 2007 May 8.PMID: 17488755 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Combining classifiers for improved classification of proteins from sequence or structure.

    Melvin I, Weston J, Leslie CS, Noble WS.

    BMC Bioinformatics. 2008 Sep 22;9:389.PMID: 18808707 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Motif kernel generated by genetic programming improves remote homology and fold detection.

    Håndstad T, Hestnes AJ, Saetrom P.

    BMC Bioinformatics. 2007 Jan 25;8:23.PMID: 17254344 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Protein homology detection using string alignment kernels.

    Saigo H, Vert JP, Ueda N, Akutsu T.

    Bioinformatics. 2004 Jul 22;20(11):1682-9. Epub 2004 Feb 26.PMID: 14988126 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.

    Shah AR, Oehmen CS, Webb-Robertson BJ.

    Bioinformatics. 2008 Mar 15;24(6):783-90. Epub 2008 Feb 1.PMID: 18245127 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation.

    Russell RB, Saqi MA, Sayle RA, Bates PA, Sternberg MJ.

    J Mol Biol. 1997 Jun 13;269(3):423-39.PMID: 9199410 [PubMed - indexed for MEDLINE]Related articles

    19.

    Benchmarking protein classification algorithms via supervised cross-validation.

    Kertész-Farkas A, Dhir S, Sonego P, Pacurar M, Netoteia S, Nijveen H, Kuzniar A, Leunissen JA, Kocsor A, Pongor S.

    J Biochem Biophys Methods. 2008 Apr 24;70(6):1215-23. Epub 2007 May 31.PMID: 17604112 [PubMed - indexed for MEDLINE]Related articles

    20.

    A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach.

    Hua S, Sun Z.

    J Mol Biol. 2001 Apr 27;308(2):397-407.PMID: 11327775 [PubMed - indexed for MEDLINE]Related articles

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